miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 3' -54.8 NC_004681.1 + 2102 0.68 0.737716
Target:  5'- -gGCCGCgGCCGgaugggugcuggGCCAau-CAGCCCGg -3'
miRNA:   3'- agUGGUGaCGGC------------UGGUguuGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 2745 0.67 0.758072
Target:  5'- cCAUCAcCUGUgGGCCGuCAACGACCg- -3'
miRNA:   3'- aGUGGU-GACGgCUGGU-GUUGUUGGgc -5'
18465 3' -54.8 NC_004681.1 + 2939 0.67 0.777934
Target:  5'- cCGCCACgcgcGCCGAguucaCCAgCGAgGACCCc -3'
miRNA:   3'- aGUGGUGa---CGGCU-----GGU-GUUgUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 3919 0.72 0.468487
Target:  5'- cUACCACUGCCGGuaACGACAccgagggcuucgcugGCCUGa -3'
miRNA:   3'- aGUGGUGACGGCUggUGUUGU---------------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 4132 0.73 0.407816
Target:  5'- -gGCCGCUGagGcCCGCAACAACCCc -3'
miRNA:   3'- agUGGUGACggCuGGUGUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 5662 0.66 0.842357
Target:  5'- uUCGCCgACgacgaggucgUGCCGAuCCGCuucuuCAACCCu -3'
miRNA:   3'- -AGUGG-UG----------ACGGCU-GGUGuu---GUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 5735 0.68 0.72738
Target:  5'- cUCACCAgCUGCgUGcCCACAcCGGCaCCGg -3'
miRNA:   3'- -AGUGGU-GACG-GCuGGUGUuGUUG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 6881 0.69 0.66382
Target:  5'- gUC-CCGCUcgacGUCGACCACGGCAugUCc -3'
miRNA:   3'- -AGuGGUGA----CGGCUGGUGUUGUugGGc -5'
18465 3' -54.8 NC_004681.1 + 7215 0.68 0.706444
Target:  5'- -gGCCGgUGCCGGuaACGGCGACaCCGc -3'
miRNA:   3'- agUGGUgACGGCUggUGUUGUUG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 7240 0.66 0.842357
Target:  5'- gCGCCuuggACUGCagGAUCACcGCAuCCCGg -3'
miRNA:   3'- aGUGG----UGACGg-CUGGUGuUGUuGGGC- -5'
18465 3' -54.8 NC_004681.1 + 9204 0.66 0.833718
Target:  5'- aCGCCAgaGcCCGAgC-CAGCGGCgCCGg -3'
miRNA:   3'- aGUGGUgaC-GGCUgGuGUUGUUG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 10240 0.66 0.797216
Target:  5'- uUCGCUGCgGgUGACCuACAcccacggcuACAACCCGg -3'
miRNA:   3'- -AGUGGUGaCgGCUGG-UGU---------UGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 12360 0.68 0.70539
Target:  5'- -gACCuCgggaGUCGGCCACAGCAccgggccACCCGa -3'
miRNA:   3'- agUGGuGa---CGGCUGGUGUUGU-------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 12881 0.68 0.72738
Target:  5'- -gGCCGCUGCgggUGACCACAcCcACaCCGg -3'
miRNA:   3'- agUGGUGACG---GCUGGUGUuGuUG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 12996 0.66 0.824875
Target:  5'- aCACCGCUGgC-ACCGCgGACGACgUGg -3'
miRNA:   3'- aGUGGUGACgGcUGGUG-UUGUUGgGC- -5'
18465 3' -54.8 NC_004681.1 + 13086 0.66 0.833718
Target:  5'- cCGCCGCUGUCuAgUACAGCGcauuccguuaacACCCGc -3'
miRNA:   3'- aGUGGUGACGGcUgGUGUUGU------------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 15145 0.67 0.77499
Target:  5'- aUCugCGCgagcauggUGCCGACCugcGCGACGAacgacuuggggucuCCCGa -3'
miRNA:   3'- -AGugGUG--------ACGGCUGG---UGUUGUU--------------GGGC- -5'
18465 3' -54.8 NC_004681.1 + 16044 0.68 0.737716
Target:  5'- cCGCCGCUGucaCCGcauccGCCGCAACGcagacugccGCCCu -3'
miRNA:   3'- aGUGGUGAC---GGC-----UGGUGUUGU---------UGGGc -5'
18465 3' -54.8 NC_004681.1 + 16094 0.66 0.824875
Target:  5'- gUCACCACcGCgGcGCgCACAGCcGCCaCGg -3'
miRNA:   3'- -AGUGGUGaCGgC-UG-GUGUUGuUGG-GC- -5'
18465 3' -54.8 NC_004681.1 + 16220 0.66 0.806615
Target:  5'- -gGCCACgccuucgGCgGAaauCC-CAACGACCCGa -3'
miRNA:   3'- agUGGUGa------CGgCU---GGuGUUGUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.