miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 3' -54.8 NC_004681.1 + 6881 0.69 0.66382
Target:  5'- gUC-CCGCUcgacGUCGACCACGGCAugUCc -3'
miRNA:   3'- -AGuGGUGA----CGGCUGGUGUUGUugGGc -5'
18465 3' -54.8 NC_004681.1 + 19363 0.7 0.609967
Target:  5'- -gACCGg-GUCGACCACAcCGGCCUGg -3'
miRNA:   3'- agUGGUgaCGGCUGGUGUuGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 61906 0.7 0.609967
Target:  5'- gUUGgCGCUGUgGcACCGCGAgGACCCGa -3'
miRNA:   3'- -AGUgGUGACGgC-UGGUGUUgUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 67714 0.7 0.620737
Target:  5'- -gGCCGCUGgCGcuACCGCAuggcCAACCUGg -3'
miRNA:   3'- agUGGUGACgGC--UGGUGUu---GUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 39069 0.69 0.631516
Target:  5'- gCACCugU-CCGACCGCGccguGCAAgCCCu -3'
miRNA:   3'- aGUGGugAcGGCUGGUGU----UGUU-GGGc -5'
18465 3' -54.8 NC_004681.1 + 49791 0.69 0.631516
Target:  5'- gCACCAaggGCUG-CCACGgcuggaucgaaaACAACCCGa -3'
miRNA:   3'- aGUGGUga-CGGCuGGUGU------------UGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 73625 0.69 0.642296
Target:  5'- -gACCu---CCGACCACAACGGCCgGa -3'
miRNA:   3'- agUGGugacGGCUGGUGUUGUUGGgC- -5'
18465 3' -54.8 NC_004681.1 + 35801 0.69 0.66382
Target:  5'- cCAUUGCgggGCgCGGCCAgGACGAUCCGu -3'
miRNA:   3'- aGUGGUGa--CG-GCUGGUgUUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 37089 0.69 0.66382
Target:  5'- -aACCA--GCCGAuCCACAcgcGCAGCCCu -3'
miRNA:   3'- agUGGUgaCGGCU-GGUGU---UGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 52224 0.7 0.599216
Target:  5'- cCGCCAUccCCGACCugAcCAACCUGg -3'
miRNA:   3'- aGUGGUGacGGCUGGugUuGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 24647 0.7 0.588491
Target:  5'- aCAaCACcGCgGACCcCGACAACCCGc -3'
miRNA:   3'- aGUgGUGaCGgCUGGuGUUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 59024 0.7 0.577802
Target:  5'- cCACCGCgaauUUGACCACGAC-ACCCa -3'
miRNA:   3'- aGUGGUGac--GGCUGGUGUUGuUGGGc -5'
18465 3' -54.8 NC_004681.1 + 4132 0.73 0.407816
Target:  5'- -gGCCGCUGagGcCCGCAACAACCCc -3'
miRNA:   3'- agUGGUGACggCuGGUGUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 69957 0.72 0.45481
Target:  5'- cUCugUAUUGCCG-CUAcCGACAGCCCa -3'
miRNA:   3'- -AGugGUGACGGCuGGU-GUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 3919 0.72 0.468487
Target:  5'- cUACCACUGCCGGuaACGACAccgagggcuucgcugGCCUGa -3'
miRNA:   3'- aGUGGUGACGGCUggUGUUGU---------------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 40476 0.72 0.504582
Target:  5'- aCGCCGCgGCCGacgccGCCACGAUGuagcaaucguGCCCGa -3'
miRNA:   3'- aGUGGUGaCGGC-----UGGUGUUGU----------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 56982 0.71 0.546022
Target:  5'- gCGCUAC-GCCGACCACuACGACaaGa -3'
miRNA:   3'- aGUGGUGaCGGCUGGUGuUGUUGggC- -5'
18465 3' -54.8 NC_004681.1 + 17986 0.71 0.55656
Target:  5'- -gGCCACUcccGCUGAUCACGcACAcCCCGg -3'
miRNA:   3'- agUGGUGA---CGGCUGGUGU-UGUuGGGC- -5'
18465 3' -54.8 NC_004681.1 + 54867 0.71 0.55656
Target:  5'- aCGCCAaggaCGACCGCGGCAacagcuGCCCGa -3'
miRNA:   3'- aGUGGUgacgGCUGGUGUUGU------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 30863 0.7 0.567156
Target:  5'- aCGCCGCccGCCGACCcgcuggagccccGCGAC-ACCCu -3'
miRNA:   3'- aGUGGUGa-CGGCUGG------------UGUUGuUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.