miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 5' -51 NC_004681.1 + 74165 0.66 0.949109
Target:  5'- aGUCGGGCCaacaggUGGCCAGCGcaacguUUCUg -3'
miRNA:   3'- -CGGUUCGGga----ACCGGUUGUucu---AAGA- -5'
18465 5' -51 NC_004681.1 + 2355 0.66 0.949109
Target:  5'- cGCCAacaaGGCCCa-GGCauucuuCGAgGAGAUUCUg -3'
miRNA:   3'- -CGGU----UCGGGaaCCG------GUUgUUCUAAGA- -5'
18465 5' -51 NC_004681.1 + 7246 0.66 0.944339
Target:  5'- uGUCGAGCgCCUUGGacuGCAGGA-UCa -3'
miRNA:   3'- -CGGUUCG-GGAACCgguUGUUCUaAGa -5'
18465 5' -51 NC_004681.1 + 56066 0.66 0.944339
Target:  5'- aGCCGAGCaCCggcaccCCGACGAGGUUg- -3'
miRNA:   3'- -CGGUUCG-GGaacc--GGUUGUUCUAAga -5'
18465 5' -51 NC_004681.1 + 30671 0.66 0.939286
Target:  5'- cGCCuuGGCgCUUGcGCCggUAGGAcUCg -3'
miRNA:   3'- -CGGu-UCGgGAAC-CGGuuGUUCUaAGa -5'
18465 5' -51 NC_004681.1 + 51687 0.66 0.92832
Target:  5'- aGCCGAGCCCguuGCCggUggGuugCUc -3'
miRNA:   3'- -CGGUUCGGGaacCGGuuGuuCuaaGA- -5'
18465 5' -51 NC_004681.1 + 66901 0.66 0.92832
Target:  5'- aCCGAGCgCCUUGGCguACucGGggUCc -3'
miRNA:   3'- cGGUUCG-GGAACCGguUGu-UCuaAGa -5'
18465 5' -51 NC_004681.1 + 30855 0.66 0.92832
Target:  5'- aCCAGGCCCUUGgaGCCcGC-GGAcUCg -3'
miRNA:   3'- cGGUUCGGGAAC--CGGuUGuUCUaAGa -5'
18465 5' -51 NC_004681.1 + 37808 0.67 0.909712
Target:  5'- aGCCugcuGCCCUgaUGGUCggUGAGGUUg- -3'
miRNA:   3'- -CGGuu--CGGGA--ACCGGuuGUUCUAAga -5'
18465 5' -51 NC_004681.1 + 45010 0.67 0.902937
Target:  5'- gGgCGAGCuCUUUGGCCucuCGAGAaUCUc -3'
miRNA:   3'- -CgGUUCG-GGAACCGGuu-GUUCUaAGA- -5'
18465 5' -51 NC_004681.1 + 59423 0.67 0.902937
Target:  5'- cGCCGuccggGGUCC-UGGCCAcGCAGGAgUCc -3'
miRNA:   3'- -CGGU-----UCGGGaACCGGU-UGUUCUaAGa -5'
18465 5' -51 NC_004681.1 + 30186 0.67 0.902937
Target:  5'- cGCCAAGaaCCCUgacGGCacCGACAAGAUg-- -3'
miRNA:   3'- -CGGUUC--GGGAa--CCG--GUUGUUCUAaga -5'
18465 5' -51 NC_004681.1 + 53950 0.67 0.901549
Target:  5'- gGCCAccccccaguccgcauGGCCCUccaugaagaaggcaaUGGCgAGCAGGAUg-- -3'
miRNA:   3'- -CGGU---------------UCGGGA---------------ACCGgUUGUUCUAaga -5'
18465 5' -51 NC_004681.1 + 38134 0.68 0.873071
Target:  5'- gGCCGgauGGCCCUcGGCCuacguuGGCGAGucAUUCg -3'
miRNA:   3'- -CGGU---UCGGGAaCCGG------UUGUUC--UAAGa -5'
18465 5' -51 NC_004681.1 + 31159 0.68 0.856553
Target:  5'- aUCGAGUCCUggGGCgGGC-AGAUUCg -3'
miRNA:   3'- cGGUUCGGGAa-CCGgUUGuUCUAAGa -5'
18465 5' -51 NC_004681.1 + 46233 0.69 0.839058
Target:  5'- gGCUu-GCCCUUGGUCGACuGGAa--- -3'
miRNA:   3'- -CGGuuCGGGAACCGGUUGuUCUaaga -5'
18465 5' -51 NC_004681.1 + 15499 0.7 0.791531
Target:  5'- uUCAuGUCCUUGGCgGACAGGGUgccguUCUg -3'
miRNA:   3'- cGGUuCGGGAACCGgUUGUUCUA-----AGA- -5'
18465 5' -51 NC_004681.1 + 12208 0.7 0.791531
Target:  5'- uGCCGA--CCUUGGUCAGCGAGAcgCg -3'
miRNA:   3'- -CGGUUcgGGAACCGGUUGUUCUaaGa -5'
18465 5' -51 NC_004681.1 + 49516 0.7 0.781461
Target:  5'- aCCAGGCCa-UGGUCGACAAGGg--- -3'
miRNA:   3'- cGGUUCGGgaACCGGUUGUUCUaaga -5'
18465 5' -51 NC_004681.1 + 67430 0.7 0.77123
Target:  5'- aCCAGGCCCUgcgacacGGCCAGguCGAGGagUUCg -3'
miRNA:   3'- cGGUUCGGGAa------CCGGUU--GUUCU--AAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.