Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18465 | 5' | -51 | NC_004681.1 | + | 44228 | 0.7 | 0.750331 |
Target: 5'- gGCCAGGCCCgcGGCCu-CGGGGg--- -3' miRNA: 3'- -CGGUUCGGGaaCCGGuuGUUCUaaga -5' |
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18465 | 5' | -51 | NC_004681.1 | + | 67799 | 0.71 | 0.718073 |
Target: 5'- cGCCAgcGGCCCUUGucgucgguGCCGACGucGUUCUu -3' miRNA: 3'- -CGGU--UCGGGAAC--------CGGUUGUucUAAGA- -5' |
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18465 | 5' | -51 | NC_004681.1 | + | 3139 | 0.73 | 0.629018 |
Target: 5'- aCCAGGCCCUUGGCgCcGCGGGug-Cg -3' miRNA: 3'- cGGUUCGGGAACCG-GuUGUUCuaaGa -5' |
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18465 | 5' | -51 | NC_004681.1 | + | 24069 | 0.79 | 0.327388 |
Target: 5'- cGCCAuugucgguGGCgCCgugGGCCAGCAAGGUUCc -3' miRNA: 3'- -CGGU--------UCG-GGaa-CCGGUUGUUCUAAGa -5' |
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18465 | 5' | -51 | NC_004681.1 | + | 7371 | 0.8 | 0.274023 |
Target: 5'- cGCCAAGCCCgcGGCCGAgAAGAa--- -3' miRNA: 3'- -CGGUUCGGGaaCCGGUUgUUCUaaga -5' |
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18465 | 5' | -51 | NC_004681.1 | + | 42676 | 1.1 | 0.002809 |
Target: 5'- cGCCAAGCCCUUGGCCAACAAGAUUCUc -3' miRNA: 3'- -CGGUUCGGGAACCGGUUGUUCUAAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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