Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18466 | 3' | -51.7 | NC_004681.1 | + | 67303 | 0.66 | 0.946482 |
Target: 5'- uGCGGuuGCCGAcaGCCUcaucgccuuccuUCUCggUGGCGa -3' miRNA: 3'- -CGCUu-CGGCUuaUGGA------------AGAG--ACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 48046 | 0.66 | 0.946482 |
Target: 5'- -gGggGCUcuGGAUGCCUUCUCUcauugGaGUGUg -3' miRNA: 3'- cgCuuCGG--CUUAUGGAAGAGA-----C-CGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 39273 | 0.66 | 0.946482 |
Target: 5'- gGCGAgcaucuccgcGGcCCGGAUGCCggUCUC-GGUGa -3' miRNA: 3'- -CGCU----------UC-GGCUUAUGGa-AGAGaCCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 14460 | 0.66 | 0.941164 |
Target: 5'- gGCGAucaugcgGGCgGAGgugGCCUcgaugUUCuUGGCGCg -3' miRNA: 3'- -CGCU-------UCGgCUUa--UGGAa----GAG-ACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 44207 | 0.66 | 0.936567 |
Target: 5'- gGUGAGGCa-GGUGCCUUUg-UGGCGg -3' miRNA: 3'- -CGCUUCGgcUUAUGGAAGagACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 36014 | 0.66 | 0.931198 |
Target: 5'- uCGuuGCUGggUACCUUCaccgGGuCGCu -3' miRNA: 3'- cGCuuCGGCuuAUGGAAGaga-CC-GCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 8965 | 0.66 | 0.925554 |
Target: 5'- ----cGCUGGAUGCCUUCgagCaGGCGg -3' miRNA: 3'- cgcuuCGGCUUAUGGAAGa--GaCCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 6861 | 0.66 | 0.925554 |
Target: 5'- uUGggGCCGuAGU-CCUUCUC-GGC-Cg -3' miRNA: 3'- cGCuuCGGC-UUAuGGAAGAGaCCGcG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 21184 | 0.67 | 0.919633 |
Target: 5'- uCGAuuaacGGCCGAAUggacagcgucGCCa-CUCUGGCGg -3' miRNA: 3'- cGCU-----UCGGCUUA----------UGGaaGAGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 32099 | 0.67 | 0.913436 |
Target: 5'- cGCGgcGCCGAucagcgaGCCgaugCUGGCGa -3' miRNA: 3'- -CGCuuCGGCUua-----UGGaagaGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 45436 | 0.67 | 0.913436 |
Target: 5'- uCGAcGUCGGAgcggcCCUUCUC-GGUGCg -3' miRNA: 3'- cGCUuCGGCUUau---GGAAGAGaCCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 64899 | 0.67 | 0.913436 |
Target: 5'- -gGAGGCgGGAUGCag-CUCgUGGgGCg -3' miRNA: 3'- cgCUUCGgCUUAUGgaaGAG-ACCgCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 41855 | 0.67 | 0.913436 |
Target: 5'- cGCGGAGCCGAccuGUcccacGCCUacCUCgcaGGUGUc -3' miRNA: 3'- -CGCUUCGGCU---UA-----UGGAa-GAGa--CCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 9102 | 0.67 | 0.906966 |
Target: 5'- cCGgcGCCGcugGCUcgggCUCUGGCGUu -3' miRNA: 3'- cGCuuCGGCuuaUGGaa--GAGACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 31407 | 0.67 | 0.893214 |
Target: 5'- uGCGAccaccAGgCGAAUGCCUUCg--GGCu- -3' miRNA: 3'- -CGCU-----UCgGCUUAUGGAAGagaCCGcg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 11679 | 0.68 | 0.885939 |
Target: 5'- -gGAAGCCGGAUggcuccACCagC-CUGGCGg -3' miRNA: 3'- cgCUUCGGCUUA------UGGaaGaGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 62953 | 0.68 | 0.885939 |
Target: 5'- aGCGGucGCgGu---CCUUCUC-GGCGCg -3' miRNA: 3'- -CGCUu-CGgCuuauGGAAGAGaCCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 66163 | 0.68 | 0.885197 |
Target: 5'- cGCGAGGuuGAuguucagGUACggcaggugCUUCUCgaagaGGCGCu -3' miRNA: 3'- -CGCUUCggCU-------UAUG--------GAAGAGa----CCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 16330 | 0.68 | 0.873763 |
Target: 5'- -gGAAGCCGAGcagGCCaUCUCcgcugcggcggugggUGGCGa -3' miRNA: 3'- cgCUUCGGCUUa--UGGaAGAG---------------ACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 19173 | 0.68 | 0.870618 |
Target: 5'- gGUGAcGCCGGAUGCCUcgacagugaagUCgagCUcGGCGg -3' miRNA: 3'- -CGCUuCGGCUUAUGGA-----------AGa--GA-CCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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