miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18466 3' -51.7 NC_004681.1 + 42808 1.14 0.001658
Target:  5'- cGCGAAGCCGAAUACCUUCUCUGGCGCc -3'
miRNA:   3'- -CGCUUCGGCUUAUGGAAGAGACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 13809 0.7 0.750005
Target:  5'- gGCGAGGUCGA---CCUcaaUCUCggcGGCGUa -3'
miRNA:   3'- -CGCUUCGGCUuauGGA---AGAGa--CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 7301 0.7 0.761331
Target:  5'- cCGGcaccGGCCgccuucucGAGUACCUUCUCgugcgcgaguuccugGGCGCg -3'
miRNA:   3'- cGCU----UCGG--------CUUAUGGAAGAGa--------------CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 16222 0.7 0.778512
Target:  5'- cGCGAAGCCGAuacccgacacaGCCguggCggCUGuGCGCg -3'
miRNA:   3'- -CGCUUCGGCUua---------UGGaa--Ga-GAC-CGCG- -5'
18466 3' -51.7 NC_004681.1 + 63303 0.7 0.780506
Target:  5'- gGCGAAGCCGA--ACCUcuucccgaUCUCcGcCGCg -3'
miRNA:   3'- -CGCUUCGGCUuaUGGA--------AGAGaCcGCG- -5'
18466 3' -51.7 NC_004681.1 + 25264 0.7 0.790381
Target:  5'- cCGggGCCacuGAAUACCU--UCUGGUccGCg -3'
miRNA:   3'- cGCuuCGG---CUUAUGGAagAGACCG--CG- -5'
18466 3' -51.7 NC_004681.1 + 38985 0.7 0.800091
Target:  5'- aGC-AGGCUG---GCCUUCUCcagUGGCGCc -3'
miRNA:   3'- -CGcUUCGGCuuaUGGAAGAG---ACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 7428 0.69 0.807733
Target:  5'- gGCGggGucagccCCGggUGCCggggguggaacgUCgCUGGCGUg -3'
miRNA:   3'- -CGCuuC------GGCuuAUGGa-----------AGaGACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 26556 0.69 0.809625
Target:  5'- gGCcAGGCCGua-GCCguaCUCUGGCGg -3'
miRNA:   3'- -CGcUUCGGCuuaUGGaa-GAGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 1402 0.69 0.829029
Target:  5'- gGCGAGGUCGucgGCCagCUCgucccagacuuccugGGCGCc -3'
miRNA:   3'- -CGCUUCGGCuuaUGGaaGAGa--------------CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 61874 0.69 0.845803
Target:  5'- gGCGAcguagagcuccuGGCCGAuggcgGCCgcggUCUggUGGCGCg -3'
miRNA:   3'- -CGCU------------UCGGCUua---UGGa---AGAg-ACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 50382 0.68 0.85431
Target:  5'- cGCGggGaCGuggcCCUUCUUgcggugGGCGCg -3'
miRNA:   3'- -CGCuuCgGCuuauGGAAGAGa-----CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 38138 0.68 0.85431
Target:  5'- cCGAGGCCGGAUgGCCcUCggccuacgUUGGCGa -3'
miRNA:   3'- cGCUUCGGCUUA-UGGaAGa-------GACCGCg -5'
18466 3' -51.7 NC_004681.1 + 14987 0.68 0.85431
Target:  5'- --cGAGCCGGugaugaagACCUUCgCUGGCGa -3'
miRNA:   3'- cgcUUCGGCUua------UGGAAGaGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 67080 0.68 0.868234
Target:  5'- cGCGugcAGGCCGAcgugacuguccccgAUgucGCCUUCgagCUcGGCGCg -3'
miRNA:   3'- -CGC---UUCGGCU--------------UA---UGGAAGa--GA-CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 19173 0.68 0.870618
Target:  5'- gGUGAcGCCGGAUGCCUcgacagugaagUCgagCUcGGCGg -3'
miRNA:   3'- -CGCUuCGGCUUAUGGA-----------AGa--GA-CCGCg -5'
18466 3' -51.7 NC_004681.1 + 16330 0.68 0.873763
Target:  5'- -gGAAGCCGAGcagGCCaUCUCcgcugcggcggugggUGGCGa -3'
miRNA:   3'- cgCUUCGGCUUa--UGGaAGAG---------------ACCGCg -5'
18466 3' -51.7 NC_004681.1 + 66163 0.68 0.885197
Target:  5'- cGCGAGGuuGAuguucagGUACggcaggugCUUCUCgaagaGGCGCu -3'
miRNA:   3'- -CGCUUCggCU-------UAUG--------GAAGAGa----CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 62953 0.68 0.885939
Target:  5'- aGCGGucGCgGu---CCUUCUC-GGCGCg -3'
miRNA:   3'- -CGCUu-CGgCuuauGGAAGAGaCCGCG- -5'
18466 3' -51.7 NC_004681.1 + 11679 0.68 0.885939
Target:  5'- -gGAAGCCGGAUggcuccACCagC-CUGGCGg -3'
miRNA:   3'- cgCUUCGGCUUA------UGGaaGaGACCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.