miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18466 3' -51.7 NC_004681.1 + 1402 0.69 0.829029
Target:  5'- gGCGAGGUCGucgGCCagCUCgucccagacuuccugGGCGCc -3'
miRNA:   3'- -CGCUUCGGCuuaUGGaaGAGa--------------CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 6861 0.66 0.925554
Target:  5'- uUGggGCCGuAGU-CCUUCUC-GGC-Cg -3'
miRNA:   3'- cGCuuCGGC-UUAuGGAAGAGaCCGcG- -5'
18466 3' -51.7 NC_004681.1 + 7301 0.7 0.761331
Target:  5'- cCGGcaccGGCCgccuucucGAGUACCUUCUCgugcgcgaguuccugGGCGCg -3'
miRNA:   3'- cGCU----UCGG--------CUUAUGGAAGAGa--------------CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 7428 0.69 0.807733
Target:  5'- gGCGggGucagccCCGggUGCCggggguggaacgUCgCUGGCGUg -3'
miRNA:   3'- -CGCuuC------GGCuuAUGGa-----------AGaGACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 8965 0.66 0.925554
Target:  5'- ----cGCUGGAUGCCUUCgagCaGGCGg -3'
miRNA:   3'- cgcuuCGGCUUAUGGAAGa--GaCCGCg -5'
18466 3' -51.7 NC_004681.1 + 9102 0.67 0.906966
Target:  5'- cCGgcGCCGcugGCUcgggCUCUGGCGUu -3'
miRNA:   3'- cGCuuCGGCuuaUGGaa--GAGACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 11679 0.68 0.885939
Target:  5'- -gGAAGCCGGAUggcuccACCagC-CUGGCGg -3'
miRNA:   3'- cgCUUCGGCUUA------UGGaaGaGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 13809 0.7 0.750005
Target:  5'- gGCGAGGUCGA---CCUcaaUCUCggcGGCGUa -3'
miRNA:   3'- -CGCUUCGGCUuauGGA---AGAGa--CCGCG- -5'
18466 3' -51.7 NC_004681.1 + 14460 0.66 0.941164
Target:  5'- gGCGAucaugcgGGCgGAGgugGCCUcgaugUUCuUGGCGCg -3'
miRNA:   3'- -CGCU-------UCGgCUUa--UGGAa----GAG-ACCGCG- -5'
18466 3' -51.7 NC_004681.1 + 14987 0.68 0.85431
Target:  5'- --cGAGCCGGugaugaagACCUUCgCUGGCGa -3'
miRNA:   3'- cgcUUCGGCUua------UGGAAGaGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 16222 0.7 0.778512
Target:  5'- cGCGAAGCCGAuacccgacacaGCCguggCggCUGuGCGCg -3'
miRNA:   3'- -CGCUUCGGCUua---------UGGaa--Ga-GAC-CGCG- -5'
18466 3' -51.7 NC_004681.1 + 16330 0.68 0.873763
Target:  5'- -gGAAGCCGAGcagGCCaUCUCcgcugcggcggugggUGGCGa -3'
miRNA:   3'- cgCUUCGGCUUa--UGGaAGAG---------------ACCGCg -5'
18466 3' -51.7 NC_004681.1 + 19173 0.68 0.870618
Target:  5'- gGUGAcGCCGGAUGCCUcgacagugaagUCgagCUcGGCGg -3'
miRNA:   3'- -CGCUuCGGCUUAUGGA-----------AGa--GA-CCGCg -5'
18466 3' -51.7 NC_004681.1 + 21184 0.67 0.919633
Target:  5'- uCGAuuaacGGCCGAAUggacagcgucGCCa-CUCUGGCGg -3'
miRNA:   3'- cGCU-----UCGGCUUA----------UGGaaGAGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 25264 0.7 0.790381
Target:  5'- cCGggGCCacuGAAUACCU--UCUGGUccGCg -3'
miRNA:   3'- cGCuuCGG---CUUAUGGAagAGACCG--CG- -5'
18466 3' -51.7 NC_004681.1 + 26556 0.69 0.809625
Target:  5'- gGCcAGGCCGua-GCCguaCUCUGGCGg -3'
miRNA:   3'- -CGcUUCGGCuuaUGGaa-GAGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 31407 0.67 0.893214
Target:  5'- uGCGAccaccAGgCGAAUGCCUUCg--GGCu- -3'
miRNA:   3'- -CGCU-----UCgGCUUAUGGAAGagaCCGcg -5'
18466 3' -51.7 NC_004681.1 + 32099 0.67 0.913436
Target:  5'- cGCGgcGCCGAucagcgaGCCgaugCUGGCGa -3'
miRNA:   3'- -CGCuuCGGCUua-----UGGaagaGACCGCg -5'
18466 3' -51.7 NC_004681.1 + 36014 0.66 0.931198
Target:  5'- uCGuuGCUGggUACCUUCaccgGGuCGCu -3'
miRNA:   3'- cGCuuCGGCuuAUGGAAGaga-CC-GCG- -5'
18466 3' -51.7 NC_004681.1 + 38138 0.68 0.85431
Target:  5'- cCGAGGCCGGAUgGCCcUCggccuacgUUGGCGa -3'
miRNA:   3'- cGCUUCGGCUUA-UGGaAGa-------GACCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.