Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18466 | 3' | -51.7 | NC_004681.1 | + | 42808 | 1.14 | 0.001658 |
Target: 5'- cGCGAAGCCGAAUACCUUCUCUGGCGCc -3' miRNA: 3'- -CGCUUCGGCUUAUGGAAGAGACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 48046 | 0.66 | 0.946482 |
Target: 5'- -gGggGCUcuGGAUGCCUUCUCUcauugGaGUGUg -3' miRNA: 3'- cgCuuCGG--CUUAUGGAAGAGA-----C-CGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 36014 | 0.66 | 0.931198 |
Target: 5'- uCGuuGCUGggUACCUUCaccgGGuCGCu -3' miRNA: 3'- cGCuuCGGCuuAUGGAAGaga-CC-GCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 21184 | 0.67 | 0.919633 |
Target: 5'- uCGAuuaacGGCCGAAUggacagcgucGCCa-CUCUGGCGg -3' miRNA: 3'- cGCU-----UCGGCUUA----------UGGaaGAGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 41855 | 0.67 | 0.913436 |
Target: 5'- cGCGGAGCCGAccuGUcccacGCCUacCUCgcaGGUGUc -3' miRNA: 3'- -CGCUUCGGCU---UA-----UGGAa-GAGa--CCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 9102 | 0.67 | 0.906966 |
Target: 5'- cCGgcGCCGcugGCUcgggCUCUGGCGUu -3' miRNA: 3'- cGCuuCGGCuuaUGGaa--GAGACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 11679 | 0.68 | 0.885939 |
Target: 5'- -gGAAGCCGGAUggcuccACCagC-CUGGCGg -3' miRNA: 3'- cgCUUCGGCUUA------UGGaaGaGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 16330 | 0.68 | 0.873763 |
Target: 5'- -gGAAGCCGAGcagGCCaUCUCcgcugcggcggugggUGGCGa -3' miRNA: 3'- cgCUUCGGCUUa--UGGaAGAG---------------ACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 14987 | 0.68 | 0.85431 |
Target: 5'- --cGAGCCGGugaugaagACCUUCgCUGGCGa -3' miRNA: 3'- cgcUUCGGCUua------UGGAAGaGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 50382 | 0.68 | 0.85431 |
Target: 5'- cGCGggGaCGuggcCCUUCUUgcggugGGCGCg -3' miRNA: 3'- -CGCuuCgGCuuauGGAAGAGa-----CCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 61874 | 0.69 | 0.845803 |
Target: 5'- gGCGAcguagagcuccuGGCCGAuggcgGCCgcggUCUggUGGCGCg -3' miRNA: 3'- -CGCU------------UCGGCUua---UGGa---AGAg-ACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 1402 | 0.69 | 0.829029 |
Target: 5'- gGCGAGGUCGucgGCCagCUCgucccagacuuccugGGCGCc -3' miRNA: 3'- -CGCUUCGGCuuaUGGaaGAGa--------------CCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 26556 | 0.69 | 0.809625 |
Target: 5'- gGCcAGGCCGua-GCCguaCUCUGGCGg -3' miRNA: 3'- -CGcUUCGGCuuaUGGaa-GAGACCGCg -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 7428 | 0.69 | 0.807733 |
Target: 5'- gGCGggGucagccCCGggUGCCggggguggaacgUCgCUGGCGUg -3' miRNA: 3'- -CGCuuC------GGCuuAUGGa-----------AGaGACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 38985 | 0.7 | 0.800091 |
Target: 5'- aGC-AGGCUG---GCCUUCUCcagUGGCGCc -3' miRNA: 3'- -CGcUUCGGCuuaUGGAAGAG---ACCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 25264 | 0.7 | 0.790381 |
Target: 5'- cCGggGCCacuGAAUACCU--UCUGGUccGCg -3' miRNA: 3'- cGCuuCGG---CUUAUGGAagAGACCG--CG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 63303 | 0.7 | 0.780506 |
Target: 5'- gGCGAAGCCGA--ACCUcuucccgaUCUCcGcCGCg -3' miRNA: 3'- -CGCUUCGGCUuaUGGA--------AGAGaCcGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 16222 | 0.7 | 0.778512 |
Target: 5'- cGCGAAGCCGAuacccgacacaGCCguggCggCUGuGCGCg -3' miRNA: 3'- -CGCUUCGGCUua---------UGGaa--Ga-GAC-CGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 7301 | 0.7 | 0.761331 |
Target: 5'- cCGGcaccGGCCgccuucucGAGUACCUUCUCgugcgcgaguuccugGGCGCg -3' miRNA: 3'- cGCU----UCGG--------CUUAUGGAAGAGa--------------CCGCG- -5' |
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18466 | 3' | -51.7 | NC_004681.1 | + | 39273 | 0.66 | 0.946482 |
Target: 5'- gGCGAgcaucuccgcGGcCCGGAUGCCggUCUC-GGUGa -3' miRNA: 3'- -CGCU----------UC-GGCUUAUGGa-AGAGaCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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