Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18466 | 5' | -54.3 | NC_004681.1 | + | 51600 | 0.68 | 0.686817 |
Target: 5'- uGGCGUCGGUGUagccgagcuGGCGgCAGcGGUCg- -3' miRNA: 3'- uUUGCAGUCACA---------CCGCgGUU-CCAGau -5' |
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18466 | 5' | -54.3 | NC_004681.1 | + | 65076 | 0.69 | 0.58733 |
Target: 5'- --cCGcUCGG-GUGGuCGCCGAGGUCg- -3' miRNA: 3'- uuuGC-AGUCaCACC-GCGGUUCCAGau -5' |
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18466 | 5' | -54.3 | NC_004681.1 | + | 12487 | 0.74 | 0.332502 |
Target: 5'- cGAGCGUCgccgcGGUgGUGGUGCCAcccgAGGUCUGc -3' miRNA: 3'- -UUUGCAG-----UCA-CACCGCGGU----UCCAGAU- -5' |
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18466 | 5' | -54.3 | NC_004681.1 | + | 42843 | 1.04 | 0.003149 |
Target: 5'- uAAACGUCAGUGUGGCGCCAAGGUCUAc -3' miRNA: 3'- -UUUGCAGUCACACCGCGGUUCCAGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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