Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18468 | 5' | -57.6 | NC_004681.1 | + | 51469 | 0.66 | 0.686248 |
Target: 5'- -aGGAgcuGGGGGGCuCCGAucuuguucAGCAUCCcuuGCu -3' miRNA: 3'- gaUCU---CCCCCUGcGGCU--------UCGUAGG---CG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 16678 | 0.66 | 0.66528 |
Target: 5'- -----cGGGGACGCCGggGgcuuguagcgcuCGUCgGCa -3' miRNA: 3'- gaucucCCCCUGCGGCuuC------------GUAGgCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 32865 | 0.66 | 0.707024 |
Target: 5'- uUGGuGGGguacucgcaGGGCGCCGAGGUgguGUCC-Cg -3' miRNA: 3'- gAUCuCCC---------CCUGCGGCUUCG---UAGGcG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 51753 | 0.66 | 0.703923 |
Target: 5'- aUGGGGuGGGGAugaCGUCGGAGgGcuggucuugccaggUCCGCc -3' miRNA: 3'- gAUCUC-CCCCU---GCGGCUUCgU--------------AGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 33060 | 0.66 | 0.707024 |
Target: 5'- -cGGuacGGGuuGCCGAAGCAcCCGCc -3' miRNA: 3'- gaUCuccCCCugCGGCUUCGUaGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 34830 | 0.66 | 0.66528 |
Target: 5'- ---aAGGGGcGGCgGCCGAAGCG--CGCg -3' miRNA: 3'- gaucUCCCC-CUG-CGGCUUCGUagGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 22915 | 0.66 | 0.675783 |
Target: 5'- -cGGAGGcGGGGuCGCCccGGCGaugCCGUa -3' miRNA: 3'- gaUCUCC-CCCU-GCGGcuUCGUa--GGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 46939 | 0.67 | 0.601982 |
Target: 5'- -----cGGGG-UGCCGggGCGguugCCGCg -3' miRNA: 3'- gaucucCCCCuGCGGCuuCGUa---GGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 45120 | 0.67 | 0.633638 |
Target: 5'- gUAGGaGGGGACccagucauuGCCGAAGCGggcgaCGCc -3' miRNA: 3'- gAUCUcCCCCUG---------CGGCUUCGUag---GCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 35630 | 0.67 | 0.611466 |
Target: 5'- -cAGAcGuGGGGuucgacauggugcGCGCCGAGuacuGCAUCUGCg -3' miRNA: 3'- gaUCU-C-CCCC-------------UGCGGCUU----CGUAGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 25044 | 0.67 | 0.644198 |
Target: 5'- aCUGGAugauGcGGGGcCGUCGAAGUcgacgCCGCg -3' miRNA: 3'- -GAUCU----C-CCCCuGCGGCUUCGua---GGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 41659 | 0.67 | 0.633638 |
Target: 5'- ----cGGGGuGGCGCUGcauGGCggCCGCg -3' miRNA: 3'- gaucuCCCC-CUGCGGCu--UCGuaGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 49547 | 0.67 | 0.623076 |
Target: 5'- gUAGcGGGGGcCGUgGAAGCAcuggCCGg -3' miRNA: 3'- gAUCuCCCCCuGCGgCUUCGUa---GGCg -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 62718 | 0.67 | 0.601982 |
Target: 5'- -cGGGGuGGGGGCGuaGAugaccuccaaAGCAucccUCCGCa -3' miRNA: 3'- gaUCUC-CCCCUGCggCU----------UCGU----AGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 19635 | 0.67 | 0.654749 |
Target: 5'- --cGAGGGuGGGCaaGCCuGGgacggcagcGGCAUCCGUa -3' miRNA: 3'- gauCUCCC-CCUG--CGG-CU---------UCGUAGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 18204 | 0.68 | 0.560141 |
Target: 5'- cCUGGccGGGGGCGCCGAuGCcggggaugCCGa -3' miRNA: 3'- -GAUCucCCCCUGCGGCUuCGua------GGCg -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 59181 | 0.68 | 0.580984 |
Target: 5'- uCUGG-GGGGuGCGCUGAuaGGCAagggUUCGCa -3' miRNA: 3'- -GAUCuCCCCcUGCGGCU--UCGU----AGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 49790 | 0.68 | 0.591467 |
Target: 5'- --uGAGGGGGAgGuaGAGGCcgCagaGCg -3' miRNA: 3'- gauCUCCCCCUgCggCUUCGuaGg--CG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 16598 | 0.68 | 0.569497 |
Target: 5'- uCUGGGaguuccaguugccGGGGcgcGGCGCCGAGuaGUCCGUg -3' miRNA: 3'- -GAUCU-------------CCCC---CUGCGGCUUcgUAGGCG- -5' |
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18468 | 5' | -57.6 | NC_004681.1 | + | 7169 | 0.69 | 0.479385 |
Target: 5'- -cGGuGGGGGGUGCCGuccuucauGGCG-CCGCg -3' miRNA: 3'- gaUCuCCCCCUGCGGCu-------UCGUaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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