miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18468 5' -57.6 NC_004681.1 + 890 0.73 0.314963
Target:  5'- -gAGAGcGGGAaGCCGcccuGGCGUCCGCc -3'
miRNA:   3'- gaUCUCcCCCUgCGGCu---UCGUAGGCG- -5'
18468 5' -57.6 NC_004681.1 + 998 0.73 0.300347
Target:  5'- aUGGAGGcGGACGCCaGGGCGgcuucCCGCu -3'
miRNA:   3'- gAUCUCCcCCUGCGGcUUCGUa----GGCG- -5'
18468 5' -57.6 NC_004681.1 + 6116 0.7 0.431895
Target:  5'- -gGGAGGGGcGAUGUCGuAGacgCCGCa -3'
miRNA:   3'- gaUCUCCCC-CUGCGGCuUCguaGGCG- -5'
18468 5' -57.6 NC_004681.1 + 6392 0.77 0.177526
Target:  5'- --cGAGGGGGaggaggccccgGCGCCGAAGCGaCCGg -3'
miRNA:   3'- gauCUCCCCC-----------UGCGGCUUCGUaGGCg -5'
18468 5' -57.6 NC_004681.1 + 6633 0.7 0.430974
Target:  5'- ---uGGGGGGugGCUucugcauGAGGCG-CCGCg -3'
miRNA:   3'- gaucUCCCCCugCGG-------CUUCGUaGGCG- -5'
18468 5' -57.6 NC_004681.1 + 7169 0.69 0.479385
Target:  5'- -cGGuGGGGGGUGCCGuccuucauGGCG-CCGCg -3'
miRNA:   3'- gaUCuCCCCCUGCGGCu-------UCGUaGGCG- -5'
18468 5' -57.6 NC_004681.1 + 16598 0.68 0.569497
Target:  5'- uCUGGGaguuccaguugccGGGGcgcGGCGCCGAGuaGUCCGUg -3'
miRNA:   3'- -GAUCU-------------CCCC---CUGCGGCUUcgUAGGCG- -5'
18468 5' -57.6 NC_004681.1 + 16678 0.66 0.66528
Target:  5'- -----cGGGGACGCCGggGgcuuguagcgcuCGUCgGCa -3'
miRNA:   3'- gaucucCCCCUGCGGCuuC------------GUAGgCG- -5'
18468 5' -57.6 NC_004681.1 + 18204 0.68 0.560141
Target:  5'- cCUGGccGGGGGCGCCGAuGCcggggaugCCGa -3'
miRNA:   3'- -GAUCucCCCCUGCGGCUuCGua------GGCg -5'
18468 5' -57.6 NC_004681.1 + 19635 0.67 0.654749
Target:  5'- --cGAGGGuGGGCaaGCCuGGgacggcagcGGCAUCCGUa -3'
miRNA:   3'- gauCUCCC-CCUG--CGG-CU---------UCGUAGGCG- -5'
18468 5' -57.6 NC_004681.1 + 22915 0.66 0.675783
Target:  5'- -cGGAGGcGGGGuCGCCccGGCGaugCCGUa -3'
miRNA:   3'- gaUCUCC-CCCU-GCGGcuUCGUa--GGCG- -5'
18468 5' -57.6 NC_004681.1 + 25044 0.67 0.644198
Target:  5'- aCUGGAugauGcGGGGcCGUCGAAGUcgacgCCGCg -3'
miRNA:   3'- -GAUCU----C-CCCCuGCGGCUUCGua---GGCG- -5'
18468 5' -57.6 NC_004681.1 + 27310 0.71 0.404755
Target:  5'- -aGGAGGGGcgcGACGCCGguGUAcUUCGCc -3'
miRNA:   3'- gaUCUCCCC---CUGCGGCuuCGU-AGGCG- -5'
18468 5' -57.6 NC_004681.1 + 32865 0.66 0.707024
Target:  5'- uUGGuGGGguacucgcaGGGCGCCGAGGUgguGUCC-Cg -3'
miRNA:   3'- gAUCuCCC---------CCUGCGGCUUCG---UAGGcG- -5'
18468 5' -57.6 NC_004681.1 + 33060 0.66 0.707024
Target:  5'- -cGGuacGGGuuGCCGAAGCAcCCGCc -3'
miRNA:   3'- gaUCuccCCCugCGGCUUCGUaGGCG- -5'
18468 5' -57.6 NC_004681.1 + 34830 0.66 0.66528
Target:  5'- ---aAGGGGcGGCgGCCGAAGCG--CGCg -3'
miRNA:   3'- gaucUCCCC-CUG-CGGCUUCGUagGCG- -5'
18468 5' -57.6 NC_004681.1 + 35630 0.67 0.611466
Target:  5'- -cAGAcGuGGGGuucgacauggugcGCGCCGAGuacuGCAUCUGCg -3'
miRNA:   3'- gaUCU-C-CCCC-------------UGCGGCUU----CGUAGGCG- -5'
18468 5' -57.6 NC_004681.1 + 38202 0.69 0.499089
Target:  5'- --cGAGGuuguggauGGGGCgGCCGAAGaCGUcCCGCg -3'
miRNA:   3'- gauCUCC--------CCCUG-CGGCUUC-GUA-GGCG- -5'
18468 5' -57.6 NC_004681.1 + 41659 0.67 0.633638
Target:  5'- ----cGGGGuGGCGCUGcauGGCggCCGCg -3'
miRNA:   3'- gaucuCCCC-CUGCGGCu--UCGuaGGCG- -5'
18468 5' -57.6 NC_004681.1 + 45051 1.1 0.000744
Target:  5'- cCUAGAGGGGGACGCCGAAGCAUCCGCc -3'
miRNA:   3'- -GAUCUCCCCCUGCGGCUUCGUAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.