miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18469 3' -52.7 NC_004681.1 + 33738 0.66 0.92749
Target:  5'- cGUGaggaAGGUgacCUGCGCCUccagguCGGCGACCu -3'
miRNA:   3'- -CGCg---UCCA---GAUGUGGAu-----GUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 9532 0.66 0.92749
Target:  5'- cUGCAuGGUC-ACGCCcucGCGGCGAgCGg -3'
miRNA:   3'- cGCGU-CCAGaUGUGGa--UGUUGCUgGC- -5'
18469 3' -52.7 NC_004681.1 + 31208 0.66 0.921727
Target:  5'- uGCGguGuGccgaUCUGCuCCUugAGCGugCGg -3'
miRNA:   3'- -CGCguC-C----AGAUGuGGAugUUGCugGC- -5'
18469 3' -52.7 NC_004681.1 + 59153 0.66 0.921727
Target:  5'- uCGCAGGUU--CGCC-ACggUGGCCa -3'
miRNA:   3'- cGCGUCCAGauGUGGaUGuuGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 13062 0.66 0.921135
Target:  5'- aGCGCAcGUCaGCGCCgguCAGCGugacguuGCCGc -3'
miRNA:   3'- -CGCGUcCAGaUGUGGau-GUUGC-------UGGC- -5'
18469 3' -52.7 NC_004681.1 + 74799 0.66 0.915693
Target:  5'- aGCGUuGcUCUAUGaggUCUACAGCGGCCGu -3'
miRNA:   3'- -CGCGuCcAGAUGU---GGAUGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 61791 0.66 0.909391
Target:  5'- -gGCGGGUUUcCAUCUuggagaccucgGCGGCGGCCu -3'
miRNA:   3'- cgCGUCCAGAuGUGGA-----------UGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 34421 0.66 0.909391
Target:  5'- gGCGCAGGUCgccaugAUGCCaucccagAUGACGguGCCGc -3'
miRNA:   3'- -CGCGUCCAGa-----UGUGGa------UGUUGC--UGGC- -5'
18469 3' -52.7 NC_004681.1 + 30362 0.66 0.909391
Target:  5'- uCGguGGUCUcgACGCCgUAC--CGGCCGc -3'
miRNA:   3'- cGCguCCAGA--UGUGG-AUGuuGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 38805 0.66 0.902151
Target:  5'- cGCGCAaGUCcGCcgagaccauccggGCCUACGGCGGCa- -3'
miRNA:   3'- -CGCGUcCAGaUG-------------UGGAUGUUGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 68861 0.66 0.89599
Target:  5'- aCGCAuGGUCacccACGCuCUACuggccGCGGCCGa -3'
miRNA:   3'- cGCGU-CCAGa---UGUG-GAUGu----UGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 42967 0.67 0.888897
Target:  5'- cGCGCAGG-C-ACGCgCUGCAGguguaGACCu -3'
miRNA:   3'- -CGCGUCCaGaUGUG-GAUGUUg----CUGGc -5'
18469 3' -52.7 NC_004681.1 + 8825 0.67 0.888897
Target:  5'- cGgGUAGGUCc-CGgCUuCAGCGACCGc -3'
miRNA:   3'- -CgCGUCCAGauGUgGAuGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 61980 0.67 0.881549
Target:  5'- uCGCGGGcaUGCACCUGuu-CGACCa -3'
miRNA:   3'- cGCGUCCagAUGUGGAUguuGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 45224 0.67 0.87395
Target:  5'- uUGUAGGUgUAgACCUgcGCGACGGCg- -3'
miRNA:   3'- cGCGUCCAgAUgUGGA--UGUUGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 41032 0.67 0.87395
Target:  5'- cGCgGCAGGguagcCACCcaUGCGACGGCCc -3'
miRNA:   3'- -CG-CGUCCagau-GUGG--AUGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 713 0.67 0.866106
Target:  5'- uGCG-AGGUCUGCcuGCCgggaaucgAgGACGACUGg -3'
miRNA:   3'- -CGCgUCCAGAUG--UGGa-------UgUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 56431 0.67 0.866106
Target:  5'- gGCGCg---CUGCACCUugGACG-CCu -3'
miRNA:   3'- -CGCGuccaGAUGUGGAugUUGCuGGc -5'
18469 3' -52.7 NC_004681.1 + 58669 0.67 0.866106
Target:  5'- cCGCGGGcC-ACACCUGCcuGAUGGCgGg -3'
miRNA:   3'- cGCGUCCaGaUGUGGAUG--UUGCUGgC- -5'
18469 3' -52.7 NC_004681.1 + 46438 0.67 0.858025
Target:  5'- cGCGCAGGUUcccGCgGCCUGCuccgguaccuCGGCCu -3'
miRNA:   3'- -CGCGUCCAGa--UG-UGGAUGuu--------GCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.