Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 42967 | 0.67 | 0.888897 |
Target: 5'- cGCGCAGG-C-ACGCgCUGCAGguguaGACCu -3' miRNA: 3'- -CGCGUCCaGaUGUG-GAUGUUg----CUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 8825 | 0.67 | 0.888897 |
Target: 5'- cGgGUAGGUCc-CGgCUuCAGCGACCGc -3' miRNA: 3'- -CgCGUCCAGauGUgGAuGUUGCUGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 45224 | 0.67 | 0.87395 |
Target: 5'- uUGUAGGUgUAgACCUgcGCGACGGCg- -3' miRNA: 3'- cGCGUCCAgAUgUGGA--UGUUGCUGgc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 56431 | 0.67 | 0.866106 |
Target: 5'- gGCGCg---CUGCACCUugGACG-CCu -3' miRNA: 3'- -CGCGuccaGAUGUGGAugUUGCuGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 46438 | 0.67 | 0.858025 |
Target: 5'- cGCGCAGGUUcccGCgGCCUGCuccgguaccuCGGCCu -3' miRNA: 3'- -CGCGUCCAGa--UG-UGGAUGuu--------GCUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 713 | 0.67 | 0.866106 |
Target: 5'- uGCG-AGGUCUGCcuGCCgggaaucgAgGACGACUGg -3' miRNA: 3'- -CGCgUCCAGAUG--UGGa-------UgUUGCUGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 58669 | 0.67 | 0.866106 |
Target: 5'- cCGCGGGcC-ACACCUGCcuGAUGGCgGg -3' miRNA: 3'- cGCGUCCaGaUGUGGAUG--UUGCUGgC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 41032 | 0.67 | 0.87395 |
Target: 5'- cGCgGCAGGguagcCACCcaUGCGACGGCCc -3' miRNA: 3'- -CG-CGUCCagau-GUGG--AUGUUGCUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 61980 | 0.67 | 0.881549 |
Target: 5'- uCGCGGGcaUGCACCUGuu-CGACCa -3' miRNA: 3'- cGCGUCCagAUGUGGAUguuGCUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 59153 | 0.66 | 0.921727 |
Target: 5'- uCGCAGGUU--CGCC-ACggUGGCCa -3' miRNA: 3'- cGCGUCCAGauGUGGaUGuuGCUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 31208 | 0.66 | 0.921727 |
Target: 5'- uGCGguGuGccgaUCUGCuCCUugAGCGugCGg -3' miRNA: 3'- -CGCguC-C----AGAUGuGGAugUUGCugGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 33738 | 0.66 | 0.92749 |
Target: 5'- cGUGaggaAGGUgacCUGCGCCUccagguCGGCGACCu -3' miRNA: 3'- -CGCg---UCCA---GAUGUGGAu-----GUUGCUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 13062 | 0.66 | 0.921135 |
Target: 5'- aGCGCAcGUCaGCGCCgguCAGCGugacguuGCCGc -3' miRNA: 3'- -CGCGUcCAGaUGUGGau-GUUGC-------UGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 74799 | 0.66 | 0.915693 |
Target: 5'- aGCGUuGcUCUAUGaggUCUACAGCGGCCGu -3' miRNA: 3'- -CGCGuCcAGAUGU---GGAUGUUGCUGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 30362 | 0.66 | 0.909391 |
Target: 5'- uCGguGGUCUcgACGCCgUAC--CGGCCGc -3' miRNA: 3'- cGCguCCAGA--UGUGG-AUGuuGCUGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 61791 | 0.66 | 0.909391 |
Target: 5'- -gGCGGGUUUcCAUCUuggagaccucgGCGGCGGCCu -3' miRNA: 3'- cgCGUCCAGAuGUGGA-----------UGUUGCUGGc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 34421 | 0.66 | 0.909391 |
Target: 5'- gGCGCAGGUCgccaugAUGCCaucccagAUGACGguGCCGc -3' miRNA: 3'- -CGCGUCCAGa-----UGUGGa------UGUUGC--UGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 38805 | 0.66 | 0.902151 |
Target: 5'- cGCGCAaGUCcGCcgagaccauccggGCCUACGGCGGCa- -3' miRNA: 3'- -CGCGUcCAGaUG-------------UGGAUGUUGCUGgc -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 68861 | 0.66 | 0.89599 |
Target: 5'- aCGCAuGGUCacccACGCuCUACuggccGCGGCCGa -3' miRNA: 3'- cGCGU-CCAGa---UGUG-GAUGu----UGCUGGC- -5' |
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18469 | 3' | -52.7 | NC_004681.1 | + | 9532 | 0.66 | 0.92749 |
Target: 5'- cUGCAuGGUC-ACGCCcucGCGGCGAgCGg -3' miRNA: 3'- cGCGU-CCAGaUGUGGa--UGUUGCUgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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