miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18469 3' -52.7 NC_004681.1 + 29136 0.68 0.849712
Target:  5'- cGCGuCAGG-CgugGCgACCU-CAACGGCCa -3'
miRNA:   3'- -CGC-GUCCaGa--UG-UGGAuGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 28702 0.68 0.841177
Target:  5'- cGCGCuGGUCgcaugGgACCgcuCAGUGACCGg -3'
miRNA:   3'- -CGCGuCCAGa----UgUGGau-GUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 8768 0.68 0.835952
Target:  5'- cGCGCGGGUCUACGagcaggucggcaaggUCgcCAACGcCCu -3'
miRNA:   3'- -CGCGUCCAGAUGU---------------GGauGUUGCuGGc -5'
18469 3' -52.7 NC_004681.1 + 26788 0.68 0.813392
Target:  5'- gGCGguGGuUCUGucaacuuCACC-GCGGCGGCCa -3'
miRNA:   3'- -CGCguCC-AGAU-------GUGGaUGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 14422 0.69 0.804978
Target:  5'- cGCGCAGcUCauuggcccGCGCCU-CGGCGACCu -3'
miRNA:   3'- -CGCGUCcAGa-------UGUGGAuGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 16282 0.69 0.804978
Target:  5'- gGCGCAGGgCUACcagcuccCCgaggGCAuccccGCGGCCGg -3'
miRNA:   3'- -CGCGUCCaGAUGu------GGa---UGU-----UGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 25821 0.69 0.804978
Target:  5'- cCGUAGGUCUucagguaguaGC-CCUGCGGCGAUg- -3'
miRNA:   3'- cGCGUCCAGA----------UGuGGAUGUUGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 19418 0.69 0.804978
Target:  5'- uCGUAGGUC-AUACCgaagGCGcUGACCGa -3'
miRNA:   3'- cGCGUCCAGaUGUGGa---UGUuGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 7319 0.69 0.804978
Target:  5'- aGCGCGGuGUCgccguUACCgGCAcCGGCCGc -3'
miRNA:   3'- -CGCGUC-CAGau---GUGGaUGUuGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 7254 0.69 0.795461
Target:  5'- gGCGCGGGUgUcgaGCGCCUugGACugcagGAUCa -3'
miRNA:   3'- -CGCGUCCAgA---UGUGGAugUUG-----CUGGc -5'
18469 3' -52.7 NC_004681.1 + 10336 0.69 0.795461
Target:  5'- gGUGUAGGUC---ACCcGCAGCGaACCGg -3'
miRNA:   3'- -CGCGUCCAGaugUGGaUGUUGC-UGGC- -5'
18469 3' -52.7 NC_004681.1 + 44634 0.69 0.775938
Target:  5'- aGCcacCAGGUCUACACCgacUGCAcCGugCa -3'
miRNA:   3'- -CGc--GUCCAGAUGUGG---AUGUuGCugGc -5'
18469 3' -52.7 NC_004681.1 + 50947 0.69 0.775938
Target:  5'- cGCGCuGGccaaguucggCUACACCUACGcCGACg- -3'
miRNA:   3'- -CGCGuCCa---------GAUGUGGAUGUuGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 59099 0.69 0.765953
Target:  5'- gGCGCccucccccacgAGGUCUucgaGCACCUG-GGCGGCCu -3'
miRNA:   3'- -CGCG-----------UCCAGA----UGUGGAUgUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 55915 0.7 0.755833
Target:  5'- cGCGCAGGUCgUGCGCgUGCc-CG-CCa -3'
miRNA:   3'- -CGCGUCCAG-AUGUGgAUGuuGCuGGc -5'
18469 3' -52.7 NC_004681.1 + 45276 0.7 0.755833
Target:  5'- gGCGC-GGUCgaugaaagacUGCACCUGC-GCGACgGu -3'
miRNA:   3'- -CGCGuCCAG----------AUGUGGAUGuUGCUGgC- -5'
18469 3' -52.7 NC_004681.1 + 31928 0.7 0.74559
Target:  5'- aUGUAGGUCUGgagUGCCUGCGgauugaccuugGCGACCc -3'
miRNA:   3'- cGCGUCCAGAU---GUGGAUGU-----------UGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 17803 0.7 0.735235
Target:  5'- aCGCAGGcCgACAUCaacGCGGCGGCCGc -3'
miRNA:   3'- cGCGUCCaGaUGUGGa--UGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 53230 0.7 0.714231
Target:  5'- aGCuCAGGUgUcgagugGCACCUGCAccagGCGGCCa -3'
miRNA:   3'- -CGcGUCCAgA------UGUGGAUGU----UGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 11200 0.7 0.714231
Target:  5'- -aGCuGGUCUGCGCCUACcuguCG-CCa -3'
miRNA:   3'- cgCGuCCAGAUGUGGAUGuu--GCuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.