miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18469 3' -52.7 NC_004681.1 + 29136 0.68 0.849712
Target:  5'- cGCGuCAGG-CgugGCgACCU-CAACGGCCa -3'
miRNA:   3'- -CGC-GUCCaGa--UG-UGGAuGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 30362 0.66 0.909391
Target:  5'- uCGguGGUCUcgACGCCgUAC--CGGCCGc -3'
miRNA:   3'- cGCguCCAGA--UGUGG-AUGuuGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 31208 0.66 0.921727
Target:  5'- uGCGguGuGccgaUCUGCuCCUugAGCGugCGg -3'
miRNA:   3'- -CGCguC-C----AGAUGuGGAugUUGCugGC- -5'
18469 3' -52.7 NC_004681.1 + 31928 0.7 0.74559
Target:  5'- aUGUAGGUCUGgagUGCCUGCGgauugaccuugGCGACCc -3'
miRNA:   3'- cGCGUCCAGAU---GUGGAUGU-----------UGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 33738 0.66 0.92749
Target:  5'- cGUGaggaAGGUgacCUGCGCCUccagguCGGCGACCu -3'
miRNA:   3'- -CGCg---UCCA---GAUGUGGAu-----GUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 34421 0.66 0.909391
Target:  5'- gGCGCAGGUCgccaugAUGCCaucccagAUGACGguGCCGc -3'
miRNA:   3'- -CGCGUCCAGa-----UGUGGa------UGUUGC--UGGC- -5'
18469 3' -52.7 NC_004681.1 + 38805 0.66 0.902151
Target:  5'- cGCGCAaGUCcGCcgagaccauccggGCCUACGGCGGCa- -3'
miRNA:   3'- -CGCGUcCAGaUG-------------UGGAUGUUGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 38911 0.72 0.62791
Target:  5'- gGCGUGGGUCaauccaugGCcaGCCUGCAAcCGGCCa -3'
miRNA:   3'- -CGCGUCCAGa-------UG--UGGAUGUU-GCUGGc -5'
18469 3' -52.7 NC_004681.1 + 39109 0.75 0.450041
Target:  5'- uGCGCGGG-CaACACCUuCcGCGACCGc -3'
miRNA:   3'- -CGCGUCCaGaUGUGGAuGuUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 40270 0.75 0.440372
Target:  5'- uGCGCGGGUCUAUcucaucgccucgAUCUGCGgcgucGCGGCCu -3'
miRNA:   3'- -CGCGUCCAGAUG------------UGGAUGU-----UGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 41032 0.67 0.87395
Target:  5'- cGCgGCAGGguagcCACCcaUGCGACGGCCc -3'
miRNA:   3'- -CG-CGUCCagau-GUGG--AUGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 42856 0.88 0.070587
Target:  5'- gGCGCcaAGGUCUACACCUGCAGCGcguGCCu -3'
miRNA:   3'- -CGCG--UCCAGAUGUGGAUGUUGC---UGGc -5'
18469 3' -52.7 NC_004681.1 + 42967 0.67 0.888897
Target:  5'- cGCGCAGG-C-ACGCgCUGCAGguguaGACCu -3'
miRNA:   3'- -CGCGUCCaGaUGUG-GAUGUUg----CUGGc -5'
18469 3' -52.7 NC_004681.1 + 44634 0.69 0.775938
Target:  5'- aGCcacCAGGUCUACACCgacUGCAcCGugCa -3'
miRNA:   3'- -CGc--GUCCAGAUGUGG---AUGUuGCugGc -5'
18469 3' -52.7 NC_004681.1 + 45129 1.11 0.002101
Target:  5'- cGCGCAGGUCUACACCUACAACGACCGu -3'
miRNA:   3'- -CGCGUCCAGAUGUGGAUGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 45224 0.67 0.87395
Target:  5'- uUGUAGGUgUAgACCUgcGCGACGGCg- -3'
miRNA:   3'- cGCGUCCAgAUgUGGA--UGUUGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 45276 0.7 0.755833
Target:  5'- gGCGC-GGUCgaugaaagacUGCACCUGC-GCGACgGu -3'
miRNA:   3'- -CGCGuCCAG----------AUGUGGAUGuUGCUGgC- -5'
18469 3' -52.7 NC_004681.1 + 46438 0.67 0.858025
Target:  5'- cGCGCAGGUUcccGCgGCCUGCuccgguaccuCGGCCu -3'
miRNA:   3'- -CGCGUCCAGa--UG-UGGAUGuu--------GCUGGc -5'
18469 3' -52.7 NC_004681.1 + 47463 0.73 0.584512
Target:  5'- aGUGCcaucAGGUCgcCGCgUGCGACGGCCa -3'
miRNA:   3'- -CGCG----UCCAGauGUGgAUGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 47501 0.71 0.660528
Target:  5'- uCGCuGcUCUACACCUACAAgcagggcgUGACCGa -3'
miRNA:   3'- cGCGuCcAGAUGUGGAUGUU--------GCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.