miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18469 3' -52.7 NC_004681.1 + 16282 0.69 0.804978
Target:  5'- gGCGCAGGgCUACcagcuccCCgaggGCAuccccGCGGCCGg -3'
miRNA:   3'- -CGCGUCCaGAUGu------GGa---UGU-----UGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 58074 0.71 0.660528
Target:  5'- gGCGCGuGGaa-GCGCgCUGCAACGGCCa -3'
miRNA:   3'- -CGCGU-CCagaUGUG-GAUGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 53230 0.7 0.714231
Target:  5'- aGCuCAGGUgUcgagugGCACCUGCAccagGCGGCCa -3'
miRNA:   3'- -CGcGUCCAgA------UGUGGAUGU----UGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 11200 0.7 0.714231
Target:  5'- -aGCuGGUCUGCGCCUACcuguCG-CCa -3'
miRNA:   3'- cgCGuCCAGAUGUGGAUGuu--GCuGGc -5'
18469 3' -52.7 NC_004681.1 + 69242 0.7 0.714231
Target:  5'- aGCGCgucaucggcuGGGUCUguccgACACCUG-AugGGCCGa -3'
miRNA:   3'- -CGCG----------UCCAGA-----UGUGGAUgUugCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 17803 0.7 0.735235
Target:  5'- aCGCAGGcCgACAUCaacGCGGCGGCCGc -3'
miRNA:   3'- cGCGUCCaGaUGUGGa--UGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 55915 0.7 0.755833
Target:  5'- cGCGCAGGUCgUGCGCgUGCc-CG-CCa -3'
miRNA:   3'- -CGCGUCCAG-AUGUGgAUGuuGCuGGc -5'
18469 3' -52.7 NC_004681.1 + 44634 0.69 0.775938
Target:  5'- aGCcacCAGGUCUACACCgacUGCAcCGugCa -3'
miRNA:   3'- -CGc--GUCCAGAUGUGG---AUGUuGCugGc -5'
18469 3' -52.7 NC_004681.1 + 50947 0.69 0.775938
Target:  5'- cGCGCuGGccaaguucggCUACACCUACGcCGACg- -3'
miRNA:   3'- -CGCGuCCa---------GAUGUGGAUGUuGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 47501 0.71 0.660528
Target:  5'- uCGCuGcUCUACACCUACAAgcagggcgUGACCGa -3'
miRNA:   3'- cGCGuCcAGAUGUGGAUGUU--------GCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 70822 0.71 0.649668
Target:  5'- cGCGCAccgugucacGGUCUcCACgCU-CAGCGGCCGc -3'
miRNA:   3'- -CGCGU---------CCAGAuGUG-GAuGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 38911 0.72 0.62791
Target:  5'- gGCGUGGGUCaauccaugGCcaGCCUGCAAcCGGCCa -3'
miRNA:   3'- -CGCGUCCAGa-------UG--UGGAUGUU-GCUGGc -5'
18469 3' -52.7 NC_004681.1 + 42856 0.88 0.070587
Target:  5'- gGCGCcaAGGUCUACACCUGCAGCGcguGCCu -3'
miRNA:   3'- -CGCG--UCCAGAUGUGGAUGUUGC---UGGc -5'
18469 3' -52.7 NC_004681.1 + 15041 0.77 0.349858
Target:  5'- cGCGCAGGUCgGCACCaUGCucgcgcaGAUGACCc -3'
miRNA:   3'- -CGCGUCCAGaUGUGG-AUG-------UUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 39109 0.75 0.450041
Target:  5'- uGCGCGGG-CaACACCUuCcGCGACCGc -3'
miRNA:   3'- -CGCGUCCaGaUGUGGAuGuUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 19256 0.74 0.489831
Target:  5'- aGCGcCAGGUCUuCACCUggaccgcggucaACAACGACg- -3'
miRNA:   3'- -CGC-GUCCAGAuGUGGA------------UGUUGCUGgc -5'
18469 3' -52.7 NC_004681.1 + 47463 0.73 0.584512
Target:  5'- aGUGCcaucAGGUCgcCGCgUGCGACGGCCa -3'
miRNA:   3'- -CGCG----UCCAGauGUGgAUGUUGCUGGc -5'
18469 3' -52.7 NC_004681.1 + 69503 0.73 0.588832
Target:  5'- uGCGCgAGGUgcgccacgccgugugCUcACugCUGCGGCGGCCGu -3'
miRNA:   3'- -CGCG-UCCA---------------GA-UGugGAUGUUGCUGGC- -5'
18469 3' -52.7 NC_004681.1 + 56747 0.72 0.595324
Target:  5'- ---aAGGgCUACACCUACGACGuGCCGc -3'
miRNA:   3'- cgcgUCCaGAUGUGGAUGUUGC-UGGC- -5'
18469 3' -52.7 NC_004681.1 + 48737 0.72 0.606167
Target:  5'- uGCGCuGGGUCUccuugguccaGCACCUccaggACGGCGGCUa -3'
miRNA:   3'- -CGCG-UCCAGA----------UGUGGA-----UGUUGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.