Results 21 - 40 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 15041 | 0.77 | 0.349858 |
Target: 5'- cGCGCAGGUCgGCACCaUGCucgcgcaGAUGACCc -3' miRNA: 3'- -CGCGUCCAGaUGUGG-AUG-------UUGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 39109 | 0.75 | 0.450041 |
Target: 5'- uGCGCGGG-CaACACCUuCcGCGACCGc -3' miRNA: 3'- -CGCGUCCaGaUGUGGAuGuUGCUGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 19256 | 0.74 | 0.489831 |
Target: 5'- aGCGcCAGGUCUuCACCUggaccgcggucaACAACGACg- -3' miRNA: 3'- -CGC-GUCCAGAuGUGGA------------UGUUGCUGgc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 47463 | 0.73 | 0.584512 |
Target: 5'- aGUGCcaucAGGUCgcCGCgUGCGACGGCCa -3' miRNA: 3'- -CGCG----UCCAGauGUGgAUGUUGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 69503 | 0.73 | 0.588832 |
Target: 5'- uGCGCgAGGUgcgccacgccgugugCUcACugCUGCGGCGGCCGu -3' miRNA: 3'- -CGCG-UCCA---------------GA-UGugGAUGUUGCUGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 56747 | 0.72 | 0.595324 |
Target: 5'- ---aAGGgCUACACCUACGACGuGCCGc -3' miRNA: 3'- cgcgUCCaGAUGUGGAUGUUGC-UGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 48737 | 0.72 | 0.606167 |
Target: 5'- uGCGCuGGGUCUccuugguccaGCACCUccaggACGGCGGCUa -3' miRNA: 3'- -CGCG-UCCAGA----------UGUGGA-----UGUUGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 11200 | 0.7 | 0.714231 |
Target: 5'- -aGCuGGUCUGCGCCUACcuguCG-CCa -3' miRNA: 3'- cgCGuCCAGAUGUGGAUGuu--GCuGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 53230 | 0.7 | 0.714231 |
Target: 5'- aGCuCAGGUgUcgagugGCACCUGCAccagGCGGCCa -3' miRNA: 3'- -CGcGUCCAgA------UGUGGAUGU----UGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 58074 | 0.71 | 0.660528 |
Target: 5'- gGCGCGuGGaa-GCGCgCUGCAACGGCCa -3' miRNA: 3'- -CGCGU-CCagaUGUG-GAUGUUGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 47501 | 0.71 | 0.660528 |
Target: 5'- uCGCuGcUCUACACCUACAAgcagggcgUGACCGa -3' miRNA: 3'- cGCGuCcAGAUGUGGAUGUU--------GCUGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 70822 | 0.71 | 0.649668 |
Target: 5'- cGCGCAccgugucacGGUCUcCACgCU-CAGCGGCCGc -3' miRNA: 3'- -CGCGU---------CCAGAuGUG-GAuGUUGCUGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 38911 | 0.72 | 0.62791 |
Target: 5'- gGCGUGGGUCaauccaugGCcaGCCUGCAAcCGGCCa -3' miRNA: 3'- -CGCGUCCAGa-------UG--UGGAUGUU-GCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 31928 | 0.7 | 0.74559 |
Target: 5'- aUGUAGGUCUGgagUGCCUGCGgauugaccuugGCGACCc -3' miRNA: 3'- cGCGUCCAGAU---GUGGAUGU-----------UGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 75527 | 0.7 | 0.714231 |
Target: 5'- aCGUGGG-CUGCGCCgcgAguACGGCCGc -3' miRNA: 3'- cGCGUCCaGAUGUGGa--UguUGCUGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 49450 | 0.7 | 0.703605 |
Target: 5'- uGCGCccaguGGUCaGCGCCcGCGGCGccGCCGu -3' miRNA: 3'- -CGCGu----CCAGaUGUGGaUGUUGC--UGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 9317 | 0.72 | 0.62791 |
Target: 5'- cGCGCGGGUUcauCACC-ACAGCGuuCGg -3' miRNA: 3'- -CGCGUCCAGau-GUGGaUGUUGCugGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 12983 | 0.74 | 0.510333 |
Target: 5'- gGUGUGGGUgUGguCACCcGCAGCGGCCGu -3' miRNA: 3'- -CGCGUCCAgAU--GUGGaUGUUGCUGGC- -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 40270 | 0.75 | 0.440372 |
Target: 5'- uGCGCGGGUCUAUcucaucgccucgAUCUGCGgcgucGCGGCCu -3' miRNA: 3'- -CGCGUCCAGAUG------------UGGAUGU-----UGCUGGc -5' |
|||||||
18469 | 3' | -52.7 | NC_004681.1 | + | 9532 | 0.66 | 0.92749 |
Target: 5'- cUGCAuGGUC-ACGCCcucGCGGCGAgCGg -3' miRNA: 3'- cGCGU-CCAGaUGUGGa--UGUUGCUgGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home