miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18470 3' -56.3 NC_004681.1 + 32324 0.66 0.756607
Target:  5'- -aGGCcGCgcUGCCGCUgCgAUGGCCu -3'
miRNA:   3'- agUCGuUGaaGCGGCGGaGgUACCGG- -5'
18470 3' -56.3 NC_004681.1 + 33006 0.66 0.746504
Target:  5'- cCGGUAGCggccUGCCGaCCUCgggaCAUGGCa -3'
miRNA:   3'- aGUCGUUGaa--GCGGC-GGAG----GUACCGg -5'
18470 3' -56.3 NC_004681.1 + 53072 0.66 0.746504
Target:  5'- gUAGCcgucaAACUUgcCGCCaGCCUgCCA-GGCCa -3'
miRNA:   3'- aGUCG-----UUGAA--GCGG-CGGA-GGUaCCGG- -5'
18470 3' -56.3 NC_004681.1 + 66069 0.66 0.736291
Target:  5'- gCGGCAGcCUUCuCgGCCUUCGUG-CCg -3'
miRNA:   3'- aGUCGUU-GAAGcGgCGGAGGUACcGG- -5'
18470 3' -56.3 NC_004681.1 + 30592 0.66 0.725978
Target:  5'- -aGGCGG-UUCGCUGCCUgacggcgugCGUGGCCc -3'
miRNA:   3'- agUCGUUgAAGCGGCGGAg--------GUACCGG- -5'
18470 3' -56.3 NC_004681.1 + 54973 0.66 0.725978
Target:  5'- -gGGCAGCUugUUGCCGCggucgUCCuUGGCg -3'
miRNA:   3'- agUCGUUGA--AGCGGCGg----AGGuACCGg -5'
18470 3' -56.3 NC_004681.1 + 66851 0.66 0.715577
Target:  5'- -aGGCGGCgUUGCCaccgGCCUUCugcgcauUGGCCa -3'
miRNA:   3'- agUCGUUGaAGCGG----CGGAGGu------ACCGG- -5'
18470 3' -56.3 NC_004681.1 + 71352 0.66 0.715577
Target:  5'- -gGGCAAUUUccaCGCUGgCUCCGUGuGCg -3'
miRNA:   3'- agUCGUUGAA---GCGGCgGAGGUAC-CGg -5'
18470 3' -56.3 NC_004681.1 + 30952 0.66 0.715577
Target:  5'- gUCGGCgGGCggcgUGCCGuCCUCCAcgaugGGUCc -3'
miRNA:   3'- -AGUCG-UUGaa--GCGGC-GGAGGUa----CCGG- -5'
18470 3' -56.3 NC_004681.1 + 23344 0.66 0.715577
Target:  5'- cCGGCAGCUUCaGgCGCCcgagGUGGUCa -3'
miRNA:   3'- aGUCGUUGAAG-CgGCGGagg-UACCGG- -5'
18470 3' -56.3 NC_004681.1 + 12196 0.66 0.714532
Target:  5'- cCGGCGucggGCUUccccgcgCGCCGCaUCCccgGUGGCCc -3'
miRNA:   3'- aGUCGU----UGAA-------GCGGCGgAGG---UACCGG- -5'
18470 3' -56.3 NC_004681.1 + 26320 0.66 0.705096
Target:  5'- -gGGCgGGCaUCGCCGCCguggcgGGCCa -3'
miRNA:   3'- agUCG-UUGaAGCGGCGGaggua-CCGG- -5'
18470 3' -56.3 NC_004681.1 + 12606 0.66 0.705096
Target:  5'- cUCGGCGGuCUcgccgUUGCUGCCUuCCGcGGUCa -3'
miRNA:   3'- -AGUCGUU-GA-----AGCGGCGGA-GGUaCCGG- -5'
18470 3' -56.3 NC_004681.1 + 1478 0.66 0.705096
Target:  5'- aUCAugcGCGACUgCGCaaCCaCCAUGGCCc -3'
miRNA:   3'- -AGU---CGUUGAaGCGgcGGaGGUACCGG- -5'
18470 3' -56.3 NC_004681.1 + 61730 0.66 0.705096
Target:  5'- cUUGGCGAUggUCGCCuCUUCCAgGGCg -3'
miRNA:   3'- -AGUCGUUGa-AGCGGcGGAGGUaCCGg -5'
18470 3' -56.3 NC_004681.1 + 34445 0.66 0.702992
Target:  5'- cCAGaUGACggUGCCGCCgacgaugaccugCCGUGGCa -3'
miRNA:   3'- aGUC-GUUGaaGCGGCGGa-----------GGUACCGg -5'
18470 3' -56.3 NC_004681.1 + 13167 0.66 0.701939
Target:  5'- gCGGCGGCUUCGagcucggcgaugcgaGCUUCCAgcuUGGCg -3'
miRNA:   3'- aGUCGUUGAAGCgg-------------CGGAGGU---ACCGg -5'
18470 3' -56.3 NC_004681.1 + 16066 0.67 0.694548
Target:  5'- --cGCAACgcagacUGCCGcCCUCgGUGGCg -3'
miRNA:   3'- aguCGUUGaa----GCGGC-GGAGgUACCGg -5'
18470 3' -56.3 NC_004681.1 + 6573 0.67 0.694548
Target:  5'- -aAGCAcCUgcgCGCCGUCaagggcgCCAUgGGCCg -3'
miRNA:   3'- agUCGUuGAa--GCGGCGGa------GGUA-CCGG- -5'
18470 3' -56.3 NC_004681.1 + 53274 0.67 0.694548
Target:  5'- gUCGucCAAUgUCGCgGCCaugaggaagUCCGUGGCCg -3'
miRNA:   3'- -AGUc-GUUGaAGCGgCGG---------AGGUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.