miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18470 5' -52.7 NC_004681.1 + 68216 0.66 0.911424
Target:  5'- -cGGUGAUGAA-GugGuaCGUCUGCUCa -3'
miRNA:   3'- caCCACUACUUgCugUc-GCAGGUGAG- -5'
18470 5' -52.7 NC_004681.1 + 33549 0.66 0.904858
Target:  5'- cUGGcccgcAACGACGGUGaUCCACUCg -3'
miRNA:   3'- cACCacuacUUGCUGUCGC-AGGUGAG- -5'
18470 5' -52.7 NC_004681.1 + 30773 0.66 0.904858
Target:  5'- --cGUGAUGGaagGCGagcuugaccGCGGCGUCCGCg- -3'
miRNA:   3'- cacCACUACU---UGC---------UGUCGCAGGUGag -5'
18470 5' -52.7 NC_004681.1 + 27620 0.66 0.890915
Target:  5'- -cGGUGgcGcuGGCGGCGGCGgCgGCUCu -3'
miRNA:   3'- caCCACuaC--UUGCUGUCGCaGgUGAG- -5'
18470 5' -52.7 NC_004681.1 + 19188 0.66 0.890915
Target:  5'- -cGGUGAgUGGugGAUGGaUGUCCGC-Ca -3'
miRNA:   3'- caCCACU-ACUugCUGUC-GCAGGUGaG- -5'
18470 5' -52.7 NC_004681.1 + 51830 0.66 0.875919
Target:  5'- cGUGGaGAUGGACGACgucgaAGUGUUCAgccgacucCUCg -3'
miRNA:   3'- -CACCaCUACUUGCUG-----UCGCAGGU--------GAG- -5'
18470 5' -52.7 NC_004681.1 + 33090 0.67 0.86804
Target:  5'- aGUGGUG--GAACGAgGGCGaCCugUa -3'
miRNA:   3'- -CACCACuaCUUGCUgUCGCaGGugAg -5'
18470 5' -52.7 NC_004681.1 + 422 0.67 0.86804
Target:  5'- uUGGccGGUGGACGACgagGGCcUCCGCUg -3'
miRNA:   3'- cACCa-CUACUUGCUG---UCGcAGGUGAg -5'
18470 5' -52.7 NC_004681.1 + 54412 0.67 0.851551
Target:  5'- gGUGGcgucGAUG-ACGACGGaUGUgCCGCUCu -3'
miRNA:   3'- -CACCa---CUACuUGCUGUC-GCA-GGUGAG- -5'
18470 5' -52.7 NC_004681.1 + 62960 0.67 0.831455
Target:  5'- -cGGUGGUGGcgGCGGCGGCGcgagcagcuuuccgUCCAUcaUCc -3'
miRNA:   3'- caCCACUACU--UGCUGUCGC--------------AGGUG--AG- -5'
18470 5' -52.7 NC_004681.1 + 29577 0.68 0.825113
Target:  5'- gGUGGUcccGGUGAGgGACAGgGUgaCCgACUCa -3'
miRNA:   3'- -CACCA---CUACUUgCUGUCgCA--GG-UGAG- -5'
18470 5' -52.7 NC_004681.1 + 21078 0.71 0.637243
Target:  5'- cUGGUucggcaccgcgcuGAUGAGCGACGGCaaUCCGCUg -3'
miRNA:   3'- cACCA-------------CUACUUGCUGUCGc-AGGUGAg -5'
18470 5' -52.7 NC_004681.1 + 22490 0.72 0.605318
Target:  5'- -cGGccg-GggUGAcCAGCGUCCACUCg -3'
miRNA:   3'- caCCacuaCuuGCU-GUCGCAGGUGAG- -5'
18470 5' -52.7 NC_004681.1 + 4808 0.77 0.323004
Target:  5'- cGUGGUGAcgcaGAuucuUGGCaAGCGUCCACUCg -3'
miRNA:   3'- -CACCACUa---CUu---GCUG-UCGCAGGUGAG- -5'
18470 5' -52.7 NC_004681.1 + 45452 1.09 0.002702
Target:  5'- uGUGGUGAUGAACGACAGCGUCCACUCc -3'
miRNA:   3'- -CACCACUACUUGCUGUCGCAGGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.