miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18473 5' -59.3 NC_004681.1 + 6707 0.66 0.618042
Target:  5'- -cGCGAAGCCCuuGAUguccuugccgCGGCCCAUggCGc -3'
miRNA:   3'- acUGCUUCGGGu-CUG----------GCCGGGUGa-GC- -5'
18473 5' -59.3 NC_004681.1 + 33577 0.66 0.618042
Target:  5'- aGACGGccaccaggaucAGCCaCGGccACUGGCCCGCa-- -3'
miRNA:   3'- aCUGCU-----------UCGG-GUC--UGGCCGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 27877 0.66 0.607596
Target:  5'- gUGGCGGacauGGCUCGGG-CGGCaCCAaCUCGu -3'
miRNA:   3'- -ACUGCU----UCGGGUCUgGCCG-GGU-GAGC- -5'
18473 5' -59.3 NC_004681.1 + 61341 0.66 0.607596
Target:  5'- gGugGAGGUagaCgAGAUCGGCCCG-UCGc -3'
miRNA:   3'- aCugCUUCG---GgUCUGGCCGGGUgAGC- -5'
18473 5' -59.3 NC_004681.1 + 4402 0.66 0.604466
Target:  5'- -aGCGAGGUCCagcccaaaccagcaGGAUUGGCCCGCa-- -3'
miRNA:   3'- acUGCUUCGGG--------------UCUGGCCGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 22898 0.66 0.597169
Target:  5'- cGGCGAuGCCgUAGuAgCGGCCCACg-- -3'
miRNA:   3'- aCUGCUuCGG-GUC-UgGCCGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 10518 0.66 0.597169
Target:  5'- aUGACGuagcGGUCCAGAauGGCCUGgUCa -3'
miRNA:   3'- -ACUGCu---UCGGGUCUggCCGGGUgAGc -5'
18473 5' -59.3 NC_004681.1 + 24956 0.66 0.597169
Target:  5'- gUGAgGGAGCCUuggcGGCCGccGCCCGCg-- -3'
miRNA:   3'- -ACUgCUUCGGGu---CUGGC--CGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 48798 0.66 0.590925
Target:  5'- gGGCGAcucgaagccgaacucGGCCCAugggaGCUGGCCCGC-Ca -3'
miRNA:   3'- aCUGCU---------------UCGGGUc----UGGCCGGGUGaGc -5'
18473 5' -59.3 NC_004681.1 + 56773 0.66 0.586769
Target:  5'- gGGCGAGGCCCAccuguacgucuACCGggucGCCCACaUCa -3'
miRNA:   3'- aCUGCUUCGGGUc----------UGGC----CGGGUG-AGc -5'
18473 5' -59.3 NC_004681.1 + 42273 0.66 0.586769
Target:  5'- aGGCGccuucacGGCCUGGAagaaGGCCCAgCUCGg -3'
miRNA:   3'- aCUGCu------UCGGGUCUgg--CCGGGU-GAGC- -5'
18473 5' -59.3 NC_004681.1 + 12075 0.66 0.586769
Target:  5'- gGACGAGGCCgAGuacgugGCCGagguccGCCCGCgCGu -3'
miRNA:   3'- aCUGCUUCGGgUC------UGGC------CGGGUGaGC- -5'
18473 5' -59.3 NC_004681.1 + 25659 0.66 0.582618
Target:  5'- uUGACGggGCCUGGuucagacucccauCCGGCCgCAUcCa -3'
miRNA:   3'- -ACUGCuuCGGGUCu------------GGCCGG-GUGaGc -5'
18473 5' -59.3 NC_004681.1 + 9884 0.66 0.576403
Target:  5'- aGACGAAguagugacauucGCCCAGcaGCUGGCCgACg-- -3'
miRNA:   3'- aCUGCUU------------CGGGUC--UGGCCGGgUGagc -5'
18473 5' -59.3 NC_004681.1 + 46706 0.67 0.555803
Target:  5'- gGGCGggGUCCucggcgaguGGGCCGGUCUggGCUUc -3'
miRNA:   3'- aCUGCuuCGGG---------UCUGGCCGGG--UGAGc -5'
18473 5' -59.3 NC_004681.1 + 44134 0.67 0.545582
Target:  5'- --cCGAGGCCgCGGGCCuGGCCCucAC-CGg -3'
miRNA:   3'- acuGCUUCGG-GUCUGG-CCGGG--UGaGC- -5'
18473 5' -59.3 NC_004681.1 + 32772 0.67 0.544563
Target:  5'- cGGCGggGuaCCCGGACCacaugucGGCCCAg--- -3'
miRNA:   3'- aCUGCuuC--GGGUCUGG-------CCGGGUgagc -5'
18473 5' -59.3 NC_004681.1 + 23937 0.67 0.535422
Target:  5'- -uGCGcGGCgCCGGAUCGGCgUGCUCa -3'
miRNA:   3'- acUGCuUCG-GGUCUGGCCGgGUGAGc -5'
18473 5' -59.3 NC_004681.1 + 9657 0.67 0.525329
Target:  5'- gUGAgGggGCCgGGucaccUCGGCCCcCUCa -3'
miRNA:   3'- -ACUgCuuCGGgUCu----GGCCGGGuGAGc -5'
18473 5' -59.3 NC_004681.1 + 19013 0.67 0.515309
Target:  5'- cGACgGGAGCCUggGGACCGGCCa----- -3'
miRNA:   3'- aCUG-CUUCGGG--UCUGGCCGGgugagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.