miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18473 5' -59.3 NC_004681.1 + 46590 1.07 0.000833
Target:  5'- cUGACGAAGCCCAGACCGGCCCACUCGc -3'
miRNA:   3'- -ACUGCUUCGGGUCUGGCCGGGUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 59344 0.73 0.259152
Target:  5'- cGGCGGAGCCCuAGucACUGGCCCcacccucuGCUCc -3'
miRNA:   3'- aCUGCUUCGGG-UC--UGGCCGGG--------UGAGc -5'
18473 5' -59.3 NC_004681.1 + 9763 0.72 0.272042
Target:  5'- aUGAgGggGCCgAGGugacCCGGCCCcCUCa -3'
miRNA:   3'- -ACUgCuuCGGgUCU----GGCCGGGuGAGc -5'
18473 5' -59.3 NC_004681.1 + 26955 0.72 0.272042
Target:  5'- gGugGcGGUggGGACCGGCCCACUgCGg -3'
miRNA:   3'- aCugCuUCGggUCUGGCCGGGUGA-GC- -5'
18473 5' -59.3 NC_004681.1 + 51864 0.71 0.336424
Target:  5'- aGAUGAuGUUCAGACCGGCgUUACUCu -3'
miRNA:   3'- aCUGCUuCGGGUCUGGCCG-GGUGAGc -5'
18473 5' -59.3 NC_004681.1 + 2879 0.7 0.35216
Target:  5'- gUGACGAAGCCCc--CCu-CCCGCUCGa -3'
miRNA:   3'- -ACUGCUUCGGGucuGGccGGGUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 6398 0.7 0.366762
Target:  5'- gGAgGAGGCCCcggcgccgaagcGACCGGCCagCACUCc -3'
miRNA:   3'- aCUgCUUCGGGu-----------CUGGCCGG--GUGAGc -5'
18473 5' -59.3 NC_004681.1 + 46432 0.7 0.36841
Target:  5'- cGAUGAuGCCCAGcuuccacaguGCCuGGCCCACg-- -3'
miRNA:   3'- aCUGCUuCGGGUC----------UGG-CCGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 12327 0.69 0.393732
Target:  5'- cGACucAGCCCAGAaCGGgCCAC-CGg -3'
miRNA:   3'- aCUGcuUCGGGUCUgGCCgGGUGaGC- -5'
18473 5' -59.3 NC_004681.1 + 57685 0.69 0.411229
Target:  5'- gGACGGuuCCCAGGCUGGCCaccugagACUUGc -3'
miRNA:   3'- aCUGCUucGGGUCUGGCCGGg------UGAGC- -5'
18473 5' -59.3 NC_004681.1 + 53255 0.69 0.411229
Target:  5'- aUGAgGAAGUCCGuGGCCGGgUgACUCa -3'
miRNA:   3'- -ACUgCUUCGGGU-CUGGCCgGgUGAGc -5'
18473 5' -59.3 NC_004681.1 + 46336 0.69 0.417466
Target:  5'- cUGugGAagcugggcaucaucGGCCCcagucuggagguGGACCGGaCCCGCaUCGa -3'
miRNA:   3'- -ACugCU--------------UCGGG------------UCUGGCC-GGGUG-AGC- -5'
18473 5' -59.3 NC_004681.1 + 15524 0.69 0.420156
Target:  5'- gGAUcAGGUCCAGACCuacGCCuCGCUCGu -3'
miRNA:   3'- aCUGcUUCGGGUCUGGc--CGG-GUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 34224 0.68 0.446693
Target:  5'- cGGCGggGCCUucuuuugcguuucGGGCCGGUguagcuucaCCGCUUa -3'
miRNA:   3'- aCUGCuuCGGG-------------UCUGGCCG---------GGUGAGc -5'
18473 5' -59.3 NC_004681.1 + 22712 0.68 0.456058
Target:  5'- gUGugGGcacAGaCCCAGAacaCCGGCacggccgCCACUCGg -3'
miRNA:   3'- -ACugCU---UC-GGGUCU---GGCCG-------GGUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 9851 0.68 0.457
Target:  5'- aGGCGAAGa-CGaACCGGCCCAC-CGc -3'
miRNA:   3'- aCUGCUUCggGUcUGGCCGGGUGaGC- -5'
18473 5' -59.3 NC_004681.1 + 57820 0.68 0.457
Target:  5'- gUGGCGAAGgagCgGGGCUGGCCC-CUCc -3'
miRNA:   3'- -ACUGCUUCg--GgUCUGGCCGGGuGAGc -5'
18473 5' -59.3 NC_004681.1 + 19469 0.68 0.466481
Target:  5'- --cCGucGCCCAGGCCGGuguggucgaCCCGgUCGa -3'
miRNA:   3'- acuGCuuCGGGUCUGGCC---------GGGUgAGC- -5'
18473 5' -59.3 NC_004681.1 + 34263 0.68 0.476061
Target:  5'- aGGCGggGCCU---UCGGCUUugUCGg -3'
miRNA:   3'- aCUGCuuCGGGucuGGCCGGGugAGC- -5'
18473 5' -59.3 NC_004681.1 + 6855 0.68 0.476061
Target:  5'- aGugGAAGgaacCCCuucccGACCGaGuCCCGCUCGa -3'
miRNA:   3'- aCugCUUC----GGGu----CUGGC-C-GGGUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.