miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18473 5' -59.3 NC_004681.1 + 2879 0.7 0.35216
Target:  5'- gUGACGAAGCCCc--CCu-CCCGCUCGa -3'
miRNA:   3'- -ACUGCUUCGGGucuGGccGGGUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 4402 0.66 0.604466
Target:  5'- -aGCGAGGUCCagcccaaaccagcaGGAUUGGCCCGCa-- -3'
miRNA:   3'- acUGCUUCGGG--------------UCUGGCCGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 6398 0.7 0.366762
Target:  5'- gGAgGAGGCCCcggcgccgaagcGACCGGCCagCACUCc -3'
miRNA:   3'- aCUgCUUCGGGu-----------CUGGCCGG--GUGAGc -5'
18473 5' -59.3 NC_004681.1 + 6707 0.66 0.618042
Target:  5'- -cGCGAAGCCCuuGAUguccuugccgCGGCCCAUggCGc -3'
miRNA:   3'- acUGCUUCGGGu-CUG----------GCCGGGUGa-GC- -5'
18473 5' -59.3 NC_004681.1 + 6855 0.68 0.476061
Target:  5'- aGugGAAGgaacCCCuucccGACCGaGuCCCGCUCGa -3'
miRNA:   3'- aCugCUUC----GGGu----CUGGC-C-GGGUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 7737 0.67 0.504378
Target:  5'- gGugGAGGUCCccgagggcgaAGACCuugaagcguucaaGGCCCGcCUCGa -3'
miRNA:   3'- aCugCUUCGGG----------UCUGG-------------CCGGGU-GAGC- -5'
18473 5' -59.3 NC_004681.1 + 9657 0.67 0.525329
Target:  5'- gUGAgGggGCCgGGucaccUCGGCCCcCUCa -3'
miRNA:   3'- -ACUgCuuCGGgUCu----GGCCGGGuGAGc -5'
18473 5' -59.3 NC_004681.1 + 9763 0.72 0.272042
Target:  5'- aUGAgGggGCCgAGGugacCCGGCCCcCUCa -3'
miRNA:   3'- -ACUgCuuCGGgUCU----GGCCGGGuGAGc -5'
18473 5' -59.3 NC_004681.1 + 9851 0.68 0.457
Target:  5'- aGGCGAAGa-CGaACCGGCCCAC-CGc -3'
miRNA:   3'- aCUGCUUCggGUcUGGCCGGGUGaGC- -5'
18473 5' -59.3 NC_004681.1 + 9884 0.66 0.576403
Target:  5'- aGACGAAguagugacauucGCCCAGcaGCUGGCCgACg-- -3'
miRNA:   3'- aCUGCUU------------CGGGUC--UGGCCGGgUGagc -5'
18473 5' -59.3 NC_004681.1 + 10518 0.66 0.597169
Target:  5'- aUGACGuagcGGUCCAGAauGGCCUGgUCa -3'
miRNA:   3'- -ACUGCu---UCGGGUCUggCCGGGUgAGc -5'
18473 5' -59.3 NC_004681.1 + 12075 0.66 0.586769
Target:  5'- gGACGAGGCCgAGuacgugGCCGagguccGCCCGCgCGu -3'
miRNA:   3'- aCUGCUUCGGgUC------UGGC------CGGGUGaGC- -5'
18473 5' -59.3 NC_004681.1 + 12327 0.69 0.393732
Target:  5'- cGACucAGCCCAGAaCGGgCCAC-CGg -3'
miRNA:   3'- aCUGcuUCGGGUCUgGCCgGGUGaGC- -5'
18473 5' -59.3 NC_004681.1 + 15524 0.69 0.420156
Target:  5'- gGAUcAGGUCCAGACCuacGCCuCGCUCGu -3'
miRNA:   3'- aCUGcUUCGGGUCUGGc--CGG-GUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 17477 0.68 0.485739
Target:  5'- uUGACGAGGUCCucGACCGcGCUggagCAgUCGg -3'
miRNA:   3'- -ACUGCUUCGGGu-CUGGC-CGG----GUgAGC- -5'
18473 5' -59.3 NC_004681.1 + 19013 0.67 0.515309
Target:  5'- cGACgGGAGCCUggGGACCGGCCa----- -3'
miRNA:   3'- aCUG-CUUCGGG--UCUGGCCGGgugagc -5'
18473 5' -59.3 NC_004681.1 + 19469 0.68 0.466481
Target:  5'- --cCGucGCCCAGGCCGGuguggucgaCCCGgUCGa -3'
miRNA:   3'- acuGCuuCGGGUCUGGCC---------GGGUgAGC- -5'
18473 5' -59.3 NC_004681.1 + 22712 0.68 0.456058
Target:  5'- gUGugGGcacAGaCCCAGAacaCCGGCacggccgCCACUCGg -3'
miRNA:   3'- -ACugCU---UC-GGGUCU---GGCCG-------GGUGAGC- -5'
18473 5' -59.3 NC_004681.1 + 22898 0.66 0.597169
Target:  5'- cGGCGAuGCCgUAGuAgCGGCCCACg-- -3'
miRNA:   3'- aCUGCUuCGG-GUC-UgGCCGGGUGagc -5'
18473 5' -59.3 NC_004681.1 + 23937 0.67 0.535422
Target:  5'- -uGCGcGGCgCCGGAUCGGCgUGCUCa -3'
miRNA:   3'- acUGCuUCG-GGUCUGGCCGgGUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.