Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18473 | 5' | -59.3 | NC_004681.1 | + | 61341 | 0.66 | 0.607596 |
Target: 5'- gGugGAGGUagaCgAGAUCGGCCCG-UCGc -3' miRNA: 3'- aCugCUUCG---GgUCUGGCCGGGUgAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 7737 | 0.67 | 0.504378 |
Target: 5'- gGugGAGGUCCccgagggcgaAGACCuugaagcguucaaGGCCCGcCUCGa -3' miRNA: 3'- aCugCUUCGGG----------UCUGG-------------CCGGGU-GAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 9657 | 0.67 | 0.525329 |
Target: 5'- gUGAgGggGCCgGGucaccUCGGCCCcCUCa -3' miRNA: 3'- -ACUgCuuCGGgUCu----GGCCGGGuGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 23937 | 0.67 | 0.535422 |
Target: 5'- -uGCGcGGCgCCGGAUCGGCgUGCUCa -3' miRNA: 3'- acUGCuUCG-GGUCUGGCCGgGUGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 44134 | 0.67 | 0.545582 |
Target: 5'- --cCGAGGCCgCGGGCCuGGCCCucAC-CGg -3' miRNA: 3'- acuGCUUCGG-GUCUGG-CCGGG--UGaGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 9884 | 0.66 | 0.576403 |
Target: 5'- aGACGAAguagugacauucGCCCAGcaGCUGGCCgACg-- -3' miRNA: 3'- aCUGCUU------------CGGGUC--UGGCCGGgUGagc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 12075 | 0.66 | 0.586769 |
Target: 5'- gGACGAGGCCgAGuacgugGCCGagguccGCCCGCgCGu -3' miRNA: 3'- aCUGCUUCGGgUC------UGGC------CGGGUGaGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 42273 | 0.66 | 0.586769 |
Target: 5'- aGGCGccuucacGGCCUGGAagaaGGCCCAgCUCGg -3' miRNA: 3'- aCUGCu------UCGGGUCUgg--CCGGGU-GAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 56773 | 0.66 | 0.586769 |
Target: 5'- gGGCGAGGCCCAccuguacgucuACCGggucGCCCACaUCa -3' miRNA: 3'- aCUGCUUCGGGUc----------UGGC----CGGGUG-AGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 55171 | 0.68 | 0.485739 |
Target: 5'- cGGCGAAGCCaUGGAUCG-CCCGCgaCGg -3' miRNA: 3'- aCUGCUUCGG-GUCUGGCcGGGUGa-GC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 6855 | 0.68 | 0.476061 |
Target: 5'- aGugGAAGgaacCCCuucccGACCGaGuCCCGCUCGa -3' miRNA: 3'- aCugCUUC----GGGu----CUGGC-C-GGGUGAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 57820 | 0.68 | 0.457 |
Target: 5'- gUGGCGAAGgagCgGGGCUGGCCC-CUCc -3' miRNA: 3'- -ACUGCUUCg--GgUCUGGCCGGGuGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 59344 | 0.73 | 0.259152 |
Target: 5'- cGGCGGAGCCCuAGucACUGGCCCcacccucuGCUCc -3' miRNA: 3'- aCUGCUUCGGG-UC--UGGCCGGG--------UGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 2879 | 0.7 | 0.35216 |
Target: 5'- gUGACGAAGCCCc--CCu-CCCGCUCGa -3' miRNA: 3'- -ACUGCUUCGGGucuGGccGGGUGAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 6398 | 0.7 | 0.366762 |
Target: 5'- gGAgGAGGCCCcggcgccgaagcGACCGGCCagCACUCc -3' miRNA: 3'- aCUgCUUCGGGu-----------CUGGCCGG--GUGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 46336 | 0.69 | 0.417466 |
Target: 5'- cUGugGAagcugggcaucaucGGCCCcagucuggagguGGACCGGaCCCGCaUCGa -3' miRNA: 3'- -ACugCU--------------UCGGG------------UCUGGCC-GGGUG-AGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 15524 | 0.69 | 0.420156 |
Target: 5'- gGAUcAGGUCCAGACCuacGCCuCGCUCGu -3' miRNA: 3'- aCUGcUUCGGGUCUGGc--CGG-GUGAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 34224 | 0.68 | 0.446693 |
Target: 5'- cGGCGggGCCUucuuuugcguuucGGGCCGGUguagcuucaCCGCUUa -3' miRNA: 3'- aCUGCuuCGGG-------------UCUGGCCG---------GGUGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 22712 | 0.68 | 0.456058 |
Target: 5'- gUGugGGcacAGaCCCAGAacaCCGGCacggccgCCACUCGg -3' miRNA: 3'- -ACugCU---UC-GGGUCU---GGCCG-------GGUGAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 9851 | 0.68 | 0.457 |
Target: 5'- aGGCGAAGa-CGaACCGGCCCAC-CGc -3' miRNA: 3'- aCUGCUUCggGUcUGGCCGGGUGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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