Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18473 | 5' | -59.3 | NC_004681.1 | + | 9851 | 0.68 | 0.457 |
Target: 5'- aGGCGAAGa-CGaACCGGCCCAC-CGc -3' miRNA: 3'- aCUGCUUCggGUcUGGCCGGGUGaGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 57820 | 0.68 | 0.457 |
Target: 5'- gUGGCGAAGgagCgGGGCUGGCCC-CUCc -3' miRNA: 3'- -ACUGCUUCg--GgUCUGGCCGGGuGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 51693 | 0.67 | 0.515309 |
Target: 5'- gGGCGAAGCCgAGcccguuGCCGGUggguugcuCCACcUCGg -3' miRNA: 3'- aCUGCUUCGGgUC------UGGCCG--------GGUG-AGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 19013 | 0.67 | 0.515309 |
Target: 5'- cGACgGGAGCCUggGGACCGGCCa----- -3' miRNA: 3'- aCUG-CUUCGGG--UCUGGCCGGgugagc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 32772 | 0.67 | 0.544563 |
Target: 5'- cGGCGggGuaCCCGGACCacaugucGGCCCAg--- -3' miRNA: 3'- aCUGCuuC--GGGUCUGG-------CCGGGUgagc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 46706 | 0.67 | 0.555803 |
Target: 5'- gGGCGggGUCCucggcgaguGGGCCGGUCUggGCUUc -3' miRNA: 3'- aCUGCuuCGGG---------UCUGGCCGGG--UGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 25659 | 0.66 | 0.582618 |
Target: 5'- uUGACGggGCCUGGuucagacucccauCCGGCCgCAUcCa -3' miRNA: 3'- -ACUGCuuCGGGUCu------------GGCCGG-GUGaGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 48798 | 0.66 | 0.590925 |
Target: 5'- gGGCGAcucgaagccgaacucGGCCCAugggaGCUGGCCCGC-Ca -3' miRNA: 3'- aCUGCU---------------UCGGGUc----UGGCCGGGUGaGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 24956 | 0.66 | 0.597169 |
Target: 5'- gUGAgGGAGCCUuggcGGCCGccGCCCGCg-- -3' miRNA: 3'- -ACUgCUUCGGGu---CUGGC--CGGGUGagc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 22898 | 0.66 | 0.597169 |
Target: 5'- cGGCGAuGCCgUAGuAgCGGCCCACg-- -3' miRNA: 3'- aCUGCUuCGG-GUC-UgGCCGGGUGagc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 17477 | 0.68 | 0.485739 |
Target: 5'- uUGACGAGGUCCucGACCGcGCUggagCAgUCGg -3' miRNA: 3'- -ACUGCUUCGGGu-CUGGC-CGG----GUgAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 34263 | 0.68 | 0.476061 |
Target: 5'- aGGCGggGCCU---UCGGCUUugUCGg -3' miRNA: 3'- aCUGCuuCGGGucuGGCCGGGugAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 6707 | 0.66 | 0.618042 |
Target: 5'- -cGCGAAGCCCuuGAUguccuugccgCGGCCCAUggCGc -3' miRNA: 3'- acUGCUUCGGGu-CUG----------GCCGGGUGa-GC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 9763 | 0.72 | 0.272042 |
Target: 5'- aUGAgGggGCCgAGGugacCCGGCCCcCUCa -3' miRNA: 3'- -ACUgCuuCGGgUCU----GGCCGGGuGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 51864 | 0.71 | 0.336424 |
Target: 5'- aGAUGAuGUUCAGACCGGCgUUACUCu -3' miRNA: 3'- aCUGCUuCGGGUCUGGCCG-GGUGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 46432 | 0.7 | 0.36841 |
Target: 5'- cGAUGAuGCCCAGcuuccacaguGCCuGGCCCACg-- -3' miRNA: 3'- aCUGCUuCGGGUC----------UGG-CCGGGUGagc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 12327 | 0.69 | 0.393732 |
Target: 5'- cGACucAGCCCAGAaCGGgCCAC-CGg -3' miRNA: 3'- aCUGcuUCGGGUCUgGCCgGGUGaGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 57685 | 0.69 | 0.411229 |
Target: 5'- gGACGGuuCCCAGGCUGGCCaccugagACUUGc -3' miRNA: 3'- aCUGCUucGGGUCUGGCCGGg------UGAGC- -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 53255 | 0.69 | 0.411229 |
Target: 5'- aUGAgGAAGUCCGuGGCCGGgUgACUCa -3' miRNA: 3'- -ACUgCUUCGGGU-CUGGCCgGgUGAGc -5' |
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18473 | 5' | -59.3 | NC_004681.1 | + | 19469 | 0.68 | 0.466481 |
Target: 5'- --cCGucGCCCAGGCCGGuguggucgaCCCGgUCGa -3' miRNA: 3'- acuGCuuCGGGUCUGGCC---------GGGUgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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