miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18474 5' -65.4 NC_004681.1 + 9332 0.67 0.286706
Target:  5'- gGCGGCAagaacaucuggGgCGUCCCGGUugucaccACCCCGc- -3'
miRNA:   3'- gCGCCGU-----------UgGCGGGGCCG-------UGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 68941 0.67 0.280793
Target:  5'- uGCGGUAGCCaGCgagaggguccuCCCGGUAgguacuCCCCGGg -3'
miRNA:   3'- gCGCCGUUGG-CG-----------GGGCCGU------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 17665 0.67 0.280793
Target:  5'- cCGCGGCGucACUGCCCCaguugaagggGGUGCCgCCa-- -3'
miRNA:   3'- -GCGCCGU--UGGCGGGG----------CCGUGG-GGcua -5'
18474 5' -65.4 NC_004681.1 + 56914 0.67 0.280793
Target:  5'- gGUGGU-GCCGaCCCCGaGUACCCCu-- -3'
miRNA:   3'- gCGCCGuUGGC-GGGGC-CGUGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 2430 0.67 0.280142
Target:  5'- gCGCGGCAcgcagaagugggcGCCGaCCUCGGUGCaUUCGAUg -3'
miRNA:   3'- -GCGCCGU-------------UGGC-GGGGCCGUG-GGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 69103 0.67 0.274338
Target:  5'- uGUGGUGugaagcGCCGCCUCGcccGCGCCCUGGc -3'
miRNA:   3'- gCGCCGU------UGGCGGGGC---CGUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 5783 0.67 0.272424
Target:  5'- cCGCGGCgAuguggaagaacgcugGCCGCCCCaaccugguacugcGGCacgagaagcgccucaGCCCCGAg -3'
miRNA:   3'- -GCGCCG-U---------------UGGCGGGG-------------CCG---------------UGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 32657 0.67 0.272424
Target:  5'- gGCGGgGACCugggccgacaugugGUCCgGGUACCCCGc- -3'
miRNA:   3'- gCGCCgUUGG--------------CGGGgCCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 28160 0.67 0.268002
Target:  5'- gGCGGCAGCgGCaCCGGCACUgaCGc- -3'
miRNA:   3'- gCGCCGUUGgCGgGGCCGUGGg-GCua -5'
18474 5' -65.4 NC_004681.1 + 32211 0.67 0.268002
Target:  5'- cCGCGGUGACCGCuuCCUGG-AUgCCGGUg -3'
miRNA:   3'- -GCGCCGUUGGCG--GGGCCgUGgGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 36770 0.67 0.268002
Target:  5'- cCGUGGUgauGCUGCuCUCGG-ACCCCGAg -3'
miRNA:   3'- -GCGCCGu--UGGCG-GGGCCgUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 62080 0.67 0.267375
Target:  5'- gCGCGGCAugGCgGCCUccaugggCGGCAUCCUGc- -3'
miRNA:   3'- -GCGCCGU--UGgCGGG-------GCCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 27720 0.68 0.249703
Target:  5'- aGCcGCcGCCGCCgCCaGCGCCaCCGAg -3'
miRNA:   3'- gCGcCGuUGGCGG-GGcCGUGG-GGCUa -5'
18474 5' -65.4 NC_004681.1 + 40559 0.68 0.249111
Target:  5'- cCGCGGCGuucaaugucaucgGCCGCCUCaagGGCGCCgaGGUc -3'
miRNA:   3'- -GCGCCGU-------------UGGCGGGG---CCGUGGggCUA- -5'
18474 5' -65.4 NC_004681.1 + 10212 0.68 0.243836
Target:  5'- -cCGGCcacACCugGCCCUGGCuCCCCGGUu -3'
miRNA:   3'- gcGCCGu--UGG--CGGGGCCGuGGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 18373 0.68 0.243836
Target:  5'- uGCGGCcguGCCGCgCCCGGaguugcCGCuCCUGAa -3'
miRNA:   3'- gCGCCGu--UGGCG-GGGCC------GUG-GGGCUa -5'
18474 5' -65.4 NC_004681.1 + 30253 0.68 0.243836
Target:  5'- aGCGGCGGCgGCCgguaCGGCgucgagACCaCCGAUc -3'
miRNA:   3'- gCGCCGUUGgCGGg---GCCG------UGG-GGCUA- -5'
18474 5' -65.4 NC_004681.1 + 39246 0.68 0.243836
Target:  5'- cCGCGGCAagggcgccaaggGCCGCCgCGuCAaguacuCCCCGAUg -3'
miRNA:   3'- -GCGCCGU------------UGGCGGgGCcGU------GGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 25215 0.68 0.240372
Target:  5'- gGCGGCGACCGCUucuUCaacaacggcggccauGGCGCCCgCGGc -3'
miRNA:   3'- gCGCCGUUGGCGG---GG---------------CCGUGGG-GCUa -5'
18474 5' -65.4 NC_004681.1 + 39350 0.68 0.238085
Target:  5'- aCGCGGCGGCCcuuggcgcccuuGCCgCGGCGCa-CGGUg -3'
miRNA:   3'- -GCGCCGUUGG------------CGGgGCCGUGggGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.