miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18475 3' -57.3 NC_004681.1 + 23467 0.66 0.668277
Target:  5'- ---cGUGGaGGCGGGCAGGaggUUGaCCAc -3'
miRNA:   3'- guucCACCaCCGCCCGUUCa--AGC-GGU- -5'
18475 3' -57.3 NC_004681.1 + 5917 0.66 0.657596
Target:  5'- aCGAuGGUGGUGGaagaGGGCAuGga-GCCc -3'
miRNA:   3'- -GUU-CCACCACCg---CCCGUuCaagCGGu -5'
18475 3' -57.3 NC_004681.1 + 36329 0.66 0.653317
Target:  5'- uCGAGucGUaGUGGUGGGCuucgugaauaaucGGUUCGCCAu -3'
miRNA:   3'- -GUUC--CAcCACCGCCCGu------------UCAAGCGGU- -5'
18475 3' -57.3 NC_004681.1 + 51608 0.67 0.636177
Target:  5'- gGAGGUGGUGGCGucGGUGua---GCCGa -3'
miRNA:   3'- gUUCCACCACCGC--CCGUucaagCGGU- -5'
18475 3' -57.3 NC_004681.1 + 30069 0.67 0.624385
Target:  5'- gGGGGuUGGgccgaccUGGCGGGCAAGggUuCCAa -3'
miRNA:   3'- gUUCC-ACC-------ACCGCCCGUUCaaGcGGU- -5'
18475 3' -57.3 NC_004681.1 + 16359 0.67 0.604043
Target:  5'- --cGGUgGGUGGCGa-CGAGggCGCCAa -3'
miRNA:   3'- guuCCA-CCACCGCccGUUCaaGCGGU- -5'
18475 3' -57.3 NC_004681.1 + 13221 0.7 0.450309
Target:  5'- aAGGGcGGUGGCGGGCAgcGGggCGg-- -3'
miRNA:   3'- gUUCCaCCACCGCCCGU--UCaaGCggu -5'
18475 3' -57.3 NC_004681.1 + 18338 0.7 0.431367
Target:  5'- --uGGcGGUGGCGGGCucGGGUUcacccccgguggCGCCAu -3'
miRNA:   3'- guuCCaCCACCGCCCG--UUCAA------------GCGGU- -5'
18475 3' -57.3 NC_004681.1 + 63841 0.71 0.360541
Target:  5'- --cGGUGGUGGCGuacCGAGggCGCCGu -3'
miRNA:   3'- guuCCACCACCGCcc-GUUCaaGCGGU- -5'
18475 3' -57.3 NC_004681.1 + 50917 0.72 0.309996
Target:  5'- -uGGGUGGcGGUGGGCGGGgucacaguuccugUUGCCAu -3'
miRNA:   3'- guUCCACCaCCGCCCGUUCa------------AGCGGU- -5'
18475 3' -57.3 NC_004681.1 + 47183 1.08 0.001042
Target:  5'- cCAAGGUGGUGGCGGGCAAGUUCGCCAc -3'
miRNA:   3'- -GUUCCACCACCGCCCGUUCAAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.