miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18475 5' -60.5 NC_004681.1 + 62253 0.66 0.571407
Target:  5'- --aGGUCuucGUCCA-CCGCgccgggggcaagaucACCGCCGAg -3'
miRNA:   3'- ggaCCGGu--CAGGUaGGCG---------------UGGCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 5513 0.66 0.555139
Target:  5'- aCCUGGCCA-UCCAgaagaacaagagCgGUACCcCCGAg -3'
miRNA:   3'- -GGACCGGUcAGGUa-----------GgCGUGGcGGCU- -5'
18475 5' -60.5 NC_004681.1 + 57318 0.66 0.554126
Target:  5'- gCUGuGCuCAGUCCAcuaccgccgcaagcUCgCGUACCGCgGGg -3'
miRNA:   3'- gGAC-CG-GUCAGGU--------------AG-GCGUGGCGgCU- -5'
18475 5' -60.5 NC_004681.1 + 43980 0.66 0.547055
Target:  5'- cCCaUGGCCGaggacGUCaaaCAUCCGCACCacuGCgGAa -3'
miRNA:   3'- -GG-ACCGGU-----CAG---GUAGGCGUGG---CGgCU- -5'
18475 5' -60.5 NC_004681.1 + 39106 0.66 0.537004
Target:  5'- aCCUGcGCgGGcaacaCCuUCCGCgACCGCCGc -3'
miRNA:   3'- -GGAC-CGgUCa----GGuAGGCG-UGGCGGCu -5'
18475 5' -60.5 NC_004681.1 + 52245 0.66 0.537004
Target:  5'- aCCUGGCCGGUggcgaCUcUCUGgGCCGCg-- -3'
miRNA:   3'- -GGACCGGUCA-----GGuAGGCgUGGCGgcu -5'
18475 5' -60.5 NC_004681.1 + 16236 0.66 0.537004
Target:  5'- -aUGGCCg--CCAgcgCCGCGaaGCCGAu -3'
miRNA:   3'- ggACCGGucaGGUa--GGCGUggCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 32354 0.66 0.531004
Target:  5'- -aUGGCCuugaguucGUCCGggcuagacacgaggCCGCGCUGCCGc -3'
miRNA:   3'- ggACCGGu-------CAGGUa-------------GGCGUGGCGGCu -5'
18475 5' -60.5 NC_004681.1 + 74085 0.66 0.527017
Target:  5'- gCCcGGUccauCAGUCCAUCCGC-CCGaCGc -3'
miRNA:   3'- -GGaCCG----GUCAGGUAGGCGuGGCgGCu -5'
18475 5' -60.5 NC_004681.1 + 66543 0.66 0.527017
Target:  5'- cCCUGGCCgaGGUCgAUaaaCGCuucGgCGCCGGa -3'
miRNA:   3'- -GGACCGG--UCAGgUAg--GCG---UgGCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 45594 0.66 0.527017
Target:  5'- -gUGGCCGGUgCCuccUCCGCGuCgGCCa- -3'
miRNA:   3'- ggACCGGUCA-GGu--AGGCGU-GgCGGcu -5'
18475 5' -60.5 NC_004681.1 + 37317 0.66 0.517101
Target:  5'- uUCUGGCCccgGGUggagacaucuaCGUgCGCGCCGUCGAg -3'
miRNA:   3'- -GGACCGG---UCAg----------GUAgGCGUGGCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 17921 0.67 0.50726
Target:  5'- --aGGCCGGUgCCuUgCGCGgCCGCCGc -3'
miRNA:   3'- ggaCCGGUCA-GGuAgGCGU-GGCGGCu -5'
18475 5' -60.5 NC_004681.1 + 9141 0.67 0.491684
Target:  5'- uCCUGGCCgacgaacgcaccguuGGUgCCGUCCGCGgggaacuucacgUUGCUGAc -3'
miRNA:   3'- -GGACCGG---------------UCA-GGUAGGCGU------------GGCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 51306 0.67 0.487824
Target:  5'- -aUGGCCGGUgaGUCCGCcgacgucaucACCGUCGc -3'
miRNA:   3'- ggACCGGUCAggUAGGCG----------UGGCGGCu -5'
18475 5' -60.5 NC_004681.1 + 54024 0.67 0.487824
Target:  5'- gCUGGCUuccacgagGGUCCG-CCGCGCgC-CCGAg -3'
miRNA:   3'- gGACCGG--------UCAGGUaGGCGUG-GcGGCU- -5'
18475 5' -60.5 NC_004681.1 + 18205 0.67 0.478239
Target:  5'- gCCUGGCCGGgggcgCCGaugCCGgGgaUGCCGAu -3'
miRNA:   3'- -GGACCGGUCa----GGUa--GGCgUg-GCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 28040 0.67 0.468747
Target:  5'- ---cGCCAGUgaugccacagCCGUugCCGUGCCGCCGAg -3'
miRNA:   3'- ggacCGGUCA----------GGUA--GGCGUGGCGGCU- -5'
18475 5' -60.5 NC_004681.1 + 2740 0.67 0.459352
Target:  5'- cCCgGGCUAGggugCCGUCCGCGgCGUg-- -3'
miRNA:   3'- -GGaCCGGUCa---GGUAGGCGUgGCGgcu -5'
18475 5' -60.5 NC_004681.1 + 58006 0.67 0.459352
Target:  5'- uCCUGGuaCCAGUCCGUUUu--CCGCCGc -3'
miRNA:   3'- -GGACC--GGUCAGGUAGGcguGGCGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.