miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18476 3' -52.5 NC_004681.1 + 1398 0.66 0.929535
Target:  5'- gGGCCugccgcaAGAUGAuGGGCCacgaauacacggccaUUGgcGCCGCg -3'
miRNA:   3'- -CCGG-------UCUACUuCUUGG---------------AGCuaCGGCG- -5'
18476 3' -52.5 NC_004681.1 + 32217 0.66 0.927857
Target:  5'- gGGCCGccgcGGUGAccgcuuCCUgGAUGCCGg -3'
miRNA:   3'- -CCGGU----CUACUucuu--GGAgCUACGGCg -5'
18476 3' -52.5 NC_004681.1 + 56131 0.66 0.927857
Target:  5'- cGGCUAccUGGAGAACCacc--GCCGCa -3'
miRNA:   3'- -CCGGUcuACUUCUUGGagcuaCGGCG- -5'
18476 3' -52.5 NC_004681.1 + 59715 0.66 0.927857
Target:  5'- uGCCGGAUGucGAgcGCCcUGGUGaCGCc -3'
miRNA:   3'- cCGGUCUACuuCU--UGGaGCUACgGCG- -5'
18476 3' -52.5 NC_004681.1 + 37314 0.66 0.927857
Target:  5'- uGGCCccGGGUGGAGAcAUCUacGUGCgCGCc -3'
miRNA:   3'- -CCGG--UCUACUUCU-UGGAgcUACG-GCG- -5'
18476 3' -52.5 NC_004681.1 + 27315 0.66 0.922085
Target:  5'- cGGCCAG--GAGGGGCg-CGAcGCCGg -3'
miRNA:   3'- -CCGGUCuaCUUCUUGgaGCUaCGGCg -5'
18476 3' -52.5 NC_004681.1 + 52319 0.66 0.922085
Target:  5'- uGGUCAGGUcGGGGAUggCGggGCCGUu -3'
miRNA:   3'- -CCGGUCUAcUUCUUGgaGCuaCGGCG- -5'
18476 3' -52.5 NC_004681.1 + 2026 0.66 0.922085
Target:  5'- aGGCC-GA-GAGGggUCUCuGAUGaaGCu -3'
miRNA:   3'- -CCGGuCUaCUUCuuGGAG-CUACggCG- -5'
18476 3' -52.5 NC_004681.1 + 70953 0.66 0.922085
Target:  5'- aGGauGGcUGAGGcAugCUCGcgGCCGCu -3'
miRNA:   3'- -CCggUCuACUUC-UugGAGCuaCGGCG- -5'
18476 3' -52.5 NC_004681.1 + 29467 0.66 0.922085
Target:  5'- uGCCAGAcGAGGugacuagggcGACCUUGAacgaGUCGCu -3'
miRNA:   3'- cCGGUCUaCUUC----------UUGGAGCUa---CGGCG- -5'
18476 3' -52.5 NC_004681.1 + 5989 0.66 0.922085
Target:  5'- uGCCGGuauucGAGGAGCCagCG-UGCgCGCg -3'
miRNA:   3'- cCGGUCua---CUUCUUGGa-GCuACG-GCG- -5'
18476 3' -52.5 NC_004681.1 + 37781 0.66 0.922085
Target:  5'- uGG-CGGAauUGGAGAAgCgacgCGcgGCCGCu -3'
miRNA:   3'- -CCgGUCU--ACUUCUUgGa---GCuaCGGCG- -5'
18476 3' -52.5 NC_004681.1 + 7211 0.66 0.922085
Target:  5'- cGGUUGGA-GggGAugGCgaCGAUGCCaGCg -3'
miRNA:   3'- -CCGGUCUaCuuCU--UGgaGCUACGG-CG- -5'
18476 3' -52.5 NC_004681.1 + 7558 0.66 0.916042
Target:  5'- gGGCCuGGcUGAgucggucggucAGAuCCUCGAcGCUGCc -3'
miRNA:   3'- -CCGGuCU-ACU-----------UCUuGGAGCUaCGGCG- -5'
18476 3' -52.5 NC_004681.1 + 66269 0.66 0.916042
Target:  5'- aGGCCAGuGUGAuccucGGACC-CGGUacacccauccgGCUGCa -3'
miRNA:   3'- -CCGGUC-UACUu----CUUGGaGCUA-----------CGGCG- -5'
18476 3' -52.5 NC_004681.1 + 26379 0.66 0.916042
Target:  5'- cGUCGGAUGAG---UCUCGGuggugaUGCCGCc -3'
miRNA:   3'- cCGGUCUACUUcuuGGAGCU------ACGGCG- -5'
18476 3' -52.5 NC_004681.1 + 30867 0.66 0.916042
Target:  5'- cGGCCGuuGGUGAccAGGcCCUUGGaGcCCGCg -3'
miRNA:   3'- -CCGGU--CUACU--UCUuGGAGCUaC-GGCG- -5'
18476 3' -52.5 NC_004681.1 + 14733 0.66 0.916042
Target:  5'- cGGCauaCGGGUGgcG-ACCUUGAUG-CGCu -3'
miRNA:   3'- -CCG---GUCUACuuCuUGGAGCUACgGCG- -5'
18476 3' -52.5 NC_004681.1 + 60136 0.66 0.916042
Target:  5'- uGCCAGGUGcGGGAGCCgcCGAagGCgaGCa -3'
miRNA:   3'- cCGGUCUAC-UUCUUGGa-GCUa-CGg-CG- -5'
18476 3' -52.5 NC_004681.1 + 56256 0.66 0.916042
Target:  5'- uGGCCGc--GGAGcuucaucGCCUUGAUGCgGCg -3'
miRNA:   3'- -CCGGUcuaCUUCu------UGGAGCUACGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.