miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18477 3' -58.9 NC_004681.1 + 32220 0.66 0.651274
Target:  5'- cGuGGGC-CGCCGCGGugaccgcuuccuGGAugCCGGuGa -3'
miRNA:   3'- uC-CUUGaGCGGCGCC------------UCUugGGCCuC- -5'
18477 3' -58.9 NC_004681.1 + 59314 0.66 0.651274
Target:  5'- cGGGGACUC-CUGCGuGgccAGGAcCCCGGAc -3'
miRNA:   3'- -UCCUUGAGcGGCGC-C---UCUU-GGGCCUc -5'
18477 3' -58.9 NC_004681.1 + 7551 0.66 0.640829
Target:  5'- cGGGACugUCGUCuacacgGUGGAGGACggCCGGGGa -3'
miRNA:   3'- uCCUUG--AGCGG------CGCCUCUUG--GGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 33067 0.66 0.630376
Target:  5'- ----uCUCcCCGCGGAGAugUgGGAGg -3'
miRNA:   3'- uccuuGAGcGGCGCCUCUugGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 68806 0.66 0.630376
Target:  5'- gAGGAGCUgGugaaggacCCGgGGAGuaccuACCgGGAGg -3'
miRNA:   3'- -UCCUUGAgC--------GGCgCCUCu----UGGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 14380 0.66 0.630376
Target:  5'- -----aUCGCCGCGGAGAACCg---- -3'
miRNA:   3'- uccuugAGCGGCGCCUCUUGGgccuc -5'
18477 3' -58.9 NC_004681.1 + 40116 0.66 0.619925
Target:  5'- cGGGGgUCGCCagguCGGuGAccGCCCGGGa -3'
miRNA:   3'- uCCUUgAGCGGc---GCCuCU--UGGGCCUc -5'
18477 3' -58.9 NC_004681.1 + 5071 0.66 0.59906
Target:  5'- uGGAAUUCggcgauguGCgCGUGGAGAACCaccaaguGGAGg -3'
miRNA:   3'- uCCUUGAG--------CG-GCGCCUCUUGGg------CCUC- -5'
18477 3' -58.9 NC_004681.1 + 69576 0.66 0.595937
Target:  5'- cAGGAaucgugucaACUCcCCGUGGAGGGCauuccagucgaucuCCGGGGu -3'
miRNA:   3'- -UCCU---------UGAGcGGCGCCUCUUG--------------GGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 40752 0.67 0.588661
Target:  5'- -uGGAUUCGCCgccuuacgugGCGGAGuAGCUgGGAGa -3'
miRNA:   3'- ucCUUGAGCGG----------CGCCUC-UUGGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 43474 0.67 0.588661
Target:  5'- cAGGGACUgugcgCGCCGgGGAuauGAcgucCCCGGAa -3'
miRNA:   3'- -UCCUUGA-----GCGGCgCCU---CUu---GGGCCUc -5'
18477 3' -58.9 NC_004681.1 + 57343 0.67 0.578296
Target:  5'- --aAGCUCGCguacCGCGGGGAGCCCcaaGGGc -3'
miRNA:   3'- uccUUGAGCG----GCGCCUCUUGGG---CCUc -5'
18477 3' -58.9 NC_004681.1 + 45085 0.67 0.578296
Target:  5'- gAGGccCUCGCCGCGGucucgcucaAGA--CCGGGGc -3'
miRNA:   3'- -UCCuuGAGCGGCGCC---------UCUugGGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 73296 0.67 0.56797
Target:  5'- --cGACUCGguaguCCGUGGAGuGCCgGGAGg -3'
miRNA:   3'- uccUUGAGC-----GGCGCCUCuUGGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 12665 0.67 0.537303
Target:  5'- uGGGGGCacccccaucacCGCCGCGGAGcucAACCguaUGGAGg -3'
miRNA:   3'- -UCCUUGa----------GCGGCGCCUC---UUGG---GCCUC- -5'
18477 3' -58.9 NC_004681.1 + 22459 0.68 0.527204
Target:  5'- gGGGAGgucCUCGCCGUGGGGGAUuucaCCGa-- -3'
miRNA:   3'- -UCCUU---GAGCGGCGCCUCUUG----GGCcuc -5'
18477 3' -58.9 NC_004681.1 + 1256 0.69 0.458805
Target:  5'- gGGGAACUCGUgGCccccgacaugucGGAGGgcGCCCaGGAa -3'
miRNA:   3'- -UCCUUGAGCGgCG------------CCUCU--UGGG-CCUc -5'
18477 3' -58.9 NC_004681.1 + 7447 0.69 0.443833
Target:  5'- cGGGAGgcUUCGCCGCGGcGGcggggucagccccggGugCCGGGGg -3'
miRNA:   3'- -UCCUU--GAGCGGCGCC-UC---------------UugGGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 2625 0.69 0.42914
Target:  5'- cGGGGAUUacguucaCGCCGCGGAcGGcacccuaGCCCGGGu -3'
miRNA:   3'- -UCCUUGA-------GCGGCGCCU-CU-------UGGGCCUc -5'
18477 3' -58.9 NC_004681.1 + 8374 0.7 0.412957
Target:  5'- --uGGCUCG-CGCGGucaucauGAACCCGGAGc -3'
miRNA:   3'- uccUUGAGCgGCGCCu------CUUGGGCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.