Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18477 | 3' | -58.9 | NC_004681.1 | + | 620 | 0.72 | 0.315288 |
Target: 5'- gAGGGACUCgcgGCCGCGGaAGAuggCCGGGu -3' miRNA: 3'- -UCCUUGAG---CGGCGCC-UCUug-GGCCUc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 670 | 0.7 | 0.378382 |
Target: 5'- aAGGAACUCGCC-UGGGGAugCggccgucacUGGAGc -3' miRNA: 3'- -UCCUUGAGCGGcGCCUCUugG---------GCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 1256 | 0.69 | 0.458805 |
Target: 5'- gGGGAACUCGUgGCccccgacaugucGGAGGgcGCCCaGGAa -3' miRNA: 3'- -UCCUUGAGCGgCG------------CCUCU--UGGG-CCUc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 2625 | 0.69 | 0.42914 |
Target: 5'- cGGGGAUUacguucaCGCCGCGGAcGGcacccuaGCCCGGGu -3' miRNA: 3'- -UCCUUGA-------GCGGCGCCU-CU-------UGGGCCUc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 5071 | 0.66 | 0.59906 |
Target: 5'- uGGAAUUCggcgauguGCgCGUGGAGAACCaccaaguGGAGg -3' miRNA: 3'- uCCUUGAG--------CG-GCGCCUCUUGGg------CCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 7349 | 0.7 | 0.404131 |
Target: 5'- uGGAcgGCcgCGUCGUGGAuGGCCUGGAGa -3' miRNA: 3'- uCCU--UGa-GCGGCGCCUcUUGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 7447 | 0.69 | 0.443833 |
Target: 5'- cGGGAGgcUUCGCCGCGGcGGcggggucagccccggGugCCGGGGg -3' miRNA: 3'- -UCCUU--GAGCGGCGCC-UC---------------UugGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 7551 | 0.66 | 0.640829 |
Target: 5'- cGGGACugUCGUCuacacgGUGGAGGACggCCGGGGa -3' miRNA: 3'- uCCUUG--AGCGG------CGCCUCUUG--GGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 8374 | 0.7 | 0.412957 |
Target: 5'- --uGGCUCG-CGCGGucaucauGAACCCGGAGc -3' miRNA: 3'- uccUUGAGCgGCGCCu------CUUGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 9132 | 0.73 | 0.280064 |
Target: 5'- cGGGcucguacccGAC-CGCCGCGGAGAuCgCGGAGa -3' miRNA: 3'- -UCC---------UUGaGCGGCGCCUCUuGgGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 10969 | 0.7 | 0.378382 |
Target: 5'- -uGAAgUCGgguaCGUGGAGAACCCGGGc -3' miRNA: 3'- ucCUUgAGCg---GCGCCUCUUGGGCCUc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 12665 | 0.67 | 0.537303 |
Target: 5'- uGGGGGCacccccaucacCGCCGCGGAGcucAACCguaUGGAGg -3' miRNA: 3'- -UCCUUGa----------GCGGCGCCUC---UUGG---GCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 14380 | 0.66 | 0.630376 |
Target: 5'- -----aUCGCCGCGGAGAACCg---- -3' miRNA: 3'- uccuugAGCGGCGCCUCUUGGgccuc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 19039 | 0.71 | 0.351358 |
Target: 5'- gAGGAcaaagccguucugcGCUC-CCGCGacGGGAGCCUGGGGa -3' miRNA: 3'- -UCCU--------------UGAGcGGCGC--CUCUUGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 22459 | 0.68 | 0.527204 |
Target: 5'- gGGGAGgucCUCGCCGUGGGGGAUuucaCCGa-- -3' miRNA: 3'- -UCCUU---GAGCGGCGCCUCUUG----GGCcuc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 28625 | 0.73 | 0.26623 |
Target: 5'- -uGAACUgguuUGCCGUGGAGAugaccgcggggguGCCCGGGGu -3' miRNA: 3'- ucCUUGA----GCGGCGCCUCU-------------UGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 32220 | 0.66 | 0.651274 |
Target: 5'- cGuGGGC-CGCCGCGGugaccgcuuccuGGAugCCGGuGa -3' miRNA: 3'- uC-CUUGaGCGGCGCC------------UCUugGGCCuC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 33067 | 0.66 | 0.630376 |
Target: 5'- ----uCUCcCCGCGGAGAugUgGGAGg -3' miRNA: 3'- uccuuGAGcGGCGCCUCUugGgCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 39349 | 0.73 | 0.280064 |
Target: 5'- gAGGGGC-CGCUGUGGAucGGCCUGGGGg -3' miRNA: 3'- -UCCUUGaGCGGCGCCUc-UUGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 40116 | 0.66 | 0.619925 |
Target: 5'- cGGGGgUCGCCagguCGGuGAccGCCCGGGa -3' miRNA: 3'- uCCUUgAGCGGc---GCCuCU--UGGGCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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