miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18477 3' -58.9 NC_004681.1 + 40752 0.67 0.588661
Target:  5'- -uGGAUUCGCCgccuuacgugGCGGAGuAGCUgGGAGa -3'
miRNA:   3'- ucCUUGAGCGG----------CGCCUC-UUGGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 43474 0.67 0.588661
Target:  5'- cAGGGACUgugcgCGCCGgGGAuauGAcgucCCCGGAa -3'
miRNA:   3'- -UCCUUGA-----GCGGCgCCU---CUu---GGGCCUc -5'
18477 3' -58.9 NC_004681.1 + 45085 0.67 0.578296
Target:  5'- gAGGccCUCGCCGCGGucucgcucaAGA--CCGGGGc -3'
miRNA:   3'- -UCCuuGAGCGGCGCC---------UCUugGGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 46538 0.7 0.378382
Target:  5'- cGGAGCagGCCGCGG-GAACCUGc-- -3'
miRNA:   3'- uCCUUGagCGGCGCCuCUUGGGCcuc -5'
18477 3' -58.9 NC_004681.1 + 48493 1.07 0.00097
Target:  5'- aAGGAACUCGCCGCGGAGAACCCGGAGc -3'
miRNA:   3'- -UCCUUGAGCGGCGCCUCUUGGGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 51708 0.71 0.322723
Target:  5'- gGGGGAUUCuCCcCGGGGAACCUGGuGg -3'
miRNA:   3'- -UCCUUGAGcGGcGCCUCUUGGGCCuC- -5'
18477 3' -58.9 NC_004681.1 + 57343 0.67 0.578296
Target:  5'- --aAGCUCGCguacCGCGGGGAGCCCcaaGGGc -3'
miRNA:   3'- uccUUGAGCG----GCGCCUCUUGGG---CCUc -5'
18477 3' -58.9 NC_004681.1 + 59314 0.66 0.651274
Target:  5'- cGGGGACUC-CUGCGuGgccAGGAcCCCGGAc -3'
miRNA:   3'- -UCCUUGAGcGGCGC-C---UCUU-GGGCCUc -5'
18477 3' -58.9 NC_004681.1 + 62581 0.73 0.273406
Target:  5'- cGGGAGCgCGCCgagGCGGAGAAgCaGGAGa -3'
miRNA:   3'- -UCCUUGaGCGG---CGCCUCUUgGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 68806 0.66 0.630376
Target:  5'- gAGGAGCUgGugaaggacCCGgGGAGuaccuACCgGGAGg -3'
miRNA:   3'- -UCCUUGAgC--------GGCgCCUCu----UGGgCCUC- -5'
18477 3' -58.9 NC_004681.1 + 69576 0.66 0.595937
Target:  5'- cAGGAaucgugucaACUCcCCGUGGAGGGCauuccagucgaucuCCGGGGu -3'
miRNA:   3'- -UCCU---------UGAGcGGCGCCUCUUG--------------GGCCUC- -5'
18477 3' -58.9 NC_004681.1 + 73296 0.67 0.56797
Target:  5'- --cGACUCGguaguCCGUGGAGuGCCgGGAGg -3'
miRNA:   3'- uccUUGAGC-----GGCGCCUCuUGGgCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.