Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18477 | 3' | -58.9 | NC_004681.1 | + | 73296 | 0.67 | 0.56797 |
Target: 5'- --cGACUCGguaguCCGUGGAGuGCCgGGAGg -3' miRNA: 3'- uccUUGAGC-----GGCGCCUCuUGGgCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 43474 | 0.67 | 0.588661 |
Target: 5'- cAGGGACUgugcgCGCCGgGGAuauGAcgucCCCGGAa -3' miRNA: 3'- -UCCUUGA-----GCGGCgCCU---CUu---GGGCCUc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 40752 | 0.67 | 0.588661 |
Target: 5'- -uGGAUUCGCCgccuuacgugGCGGAGuAGCUgGGAGa -3' miRNA: 3'- ucCUUGAGCGG----------CGCCUC-UUGGgCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 69576 | 0.66 | 0.595937 |
Target: 5'- cAGGAaucgugucaACUCcCCGUGGAGGGCauuccagucgaucuCCGGGGu -3' miRNA: 3'- -UCCU---------UGAGcGGCGCCUCUUG--------------GGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 7447 | 0.69 | 0.443833 |
Target: 5'- cGGGAGgcUUCGCCGCGGcGGcggggucagccccggGugCCGGGGg -3' miRNA: 3'- -UCCUU--GAGCGGCGCC-UC---------------UugGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 7349 | 0.7 | 0.404131 |
Target: 5'- uGGAcgGCcgCGUCGUGGAuGGCCUGGAGa -3' miRNA: 3'- uCCU--UGa-GCGGCGCCUcUUGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 670 | 0.7 | 0.378382 |
Target: 5'- aAGGAACUCGCC-UGGGGAugCggccgucacUGGAGc -3' miRNA: 3'- -UCCUUGAGCGGcGCCUCUugG---------GCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 46538 | 0.7 | 0.378382 |
Target: 5'- cGGAGCagGCCGCGG-GAACCUGc-- -3' miRNA: 3'- uCCUUGagCGGCGCCuCUUGGGCcuc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 19039 | 0.71 | 0.351358 |
Target: 5'- gAGGAcaaagccguucugcGCUC-CCGCGacGGGAGCCUGGGGa -3' miRNA: 3'- -UCCU--------------UGAGcGGCGC--CUCUUGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 620 | 0.72 | 0.315288 |
Target: 5'- gAGGGACUCgcgGCCGCGGaAGAuggCCGGGu -3' miRNA: 3'- -UCCUUGAG---CGGCGCC-UCUug-GGCCUc -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 28625 | 0.73 | 0.26623 |
Target: 5'- -uGAACUgguuUGCCGUGGAGAugaccgcggggguGCCCGGGGu -3' miRNA: 3'- ucCUUGA----GCGGCGCCUCU-------------UGGGCCUC- -5' |
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18477 | 3' | -58.9 | NC_004681.1 | + | 32220 | 0.66 | 0.651274 |
Target: 5'- cGuGGGC-CGCCGCGGugaccgcuuccuGGAugCCGGuGa -3' miRNA: 3'- uC-CUUGaGCGGCGCC------------UCUugGGCCuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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