Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 8288 | 0.66 | 0.657105 |
Target: 5'- cGGuGGCGcGGacgCCGCCA--AGGACGg -3' miRNA: 3'- -UCuCCGU-CCguaGGCGGUucUCCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 65006 | 0.66 | 0.657105 |
Target: 5'- -cAGGCGGGCG-CCGC-GGGAGaGAUGc -3' miRNA: 3'- ucUCCGUCCGUaGGCGgUUCUC-CUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 36231 | 0.66 | 0.646484 |
Target: 5'- gAGAGuGCGGGCAgaggcuaugaacUCgGCCAcugGGAGGuCu -3' miRNA: 3'- -UCUC-CGUCCGU------------AGgCGGU---UCUCCuGc -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 17273 | 0.66 | 0.635851 |
Target: 5'- cGGGcGGCGGGUAUCC-CgGAGAcGACGc -3' miRNA: 3'- -UCU-CCGUCCGUAGGcGgUUCUcCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 51609 | 0.66 | 0.625214 |
Target: 5'- cGGAGGUgguGGCGUCgguguaGCCGAGcuGGCGg -3' miRNA: 3'- -UCUCCGu--CCGUAGg-----CGGUUCucCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 64610 | 0.67 | 0.593372 |
Target: 5'- uGGGGGCAgGGUGUUCGUCAGGugaccGGCGa -3' miRNA: 3'- -UCUCCGU-CCGUAGGCGGUUCuc---CUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 50410 | 0.67 | 0.572283 |
Target: 5'- cGGGGguGcccaugaguucaGCGUCgGCCGcGGGGACGu -3' miRNA: 3'- uCUCCguC------------CGUAGgCGGUuCUCCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 63211 | 0.67 | 0.572283 |
Target: 5'- aAGAGGUucGGC-UUCGCCcGGuGGGACGu -3' miRNA: 3'- -UCUCCGu-CCGuAGGCGGuUC-UCCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 63944 | 0.67 | 0.561804 |
Target: 5'- cGAGGCaAGGC--CCGCCcGGAuuugaaccggGGACGa -3' miRNA: 3'- uCUCCG-UCCGuaGGCGGuUCU----------CCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 30158 | 0.67 | 0.551377 |
Target: 5'- -cAGGCGGcGCggCCGCgGAGuGGACc -3' miRNA: 3'- ucUCCGUC-CGuaGGCGgUUCuCCUGc -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 57740 | 0.67 | 0.54101 |
Target: 5'- cAGAGGCagugaagaAGGUGUUCGCCGAGcuucAGG-CGa -3' miRNA: 3'- -UCUCCG--------UCCGUAGGCGGUUC----UCCuGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 53036 | 0.68 | 0.530709 |
Target: 5'- -uGGGUAGGCAcUCCGCCGAGGuccucGuGCGg -3' miRNA: 3'- ucUCCGUCCGU-AGGCGGUUCU-----CcUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 24983 | 0.68 | 0.520481 |
Target: 5'- cGGGGGCucuggcggcacAGGCGUCgGCggCAAGGGuGGCGa -3' miRNA: 3'- -UCUCCG-----------UCCGUAGgCG--GUUCUC-CUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 57072 | 0.68 | 0.51033 |
Target: 5'- cGuGGacgaAGGCGucugccUCCGCCAGGAcGGACu -3' miRNA: 3'- uCuCCg---UCCGU------AGGCGGUUCU-CCUGc -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 23465 | 0.68 | 0.507301 |
Target: 5'- uGGAGGCGGGCAggagguugaccaccUCgggCGCCugaagcugccggAAGAGGugGc -3' miRNA: 3'- -UCUCCGUCCGU--------------AG---GCGG------------UUCUCCugC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 7373 | 0.68 | 0.500263 |
Target: 5'- -cAGGCGGcGCAcUCggCGCCGAGGuGGACGg -3' miRNA: 3'- ucUCCGUC-CGU-AG--GCGGUUCU-CCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 65897 | 0.68 | 0.500263 |
Target: 5'- cGGGGUgGGGCggCCgagGCCGAGAcGGACGa -3' miRNA: 3'- uCUCCG-UCCGuaGG---CGGUUCU-CCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 12703 | 0.69 | 0.4804 |
Target: 5'- uGGAGGCuGGCAUCgagggUGCCAcugagacggcuGAGGACc -3' miRNA: 3'- -UCUCCGuCCGUAG-----GCGGUu----------CUCCUGc -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 10005 | 0.69 | 0.4804 |
Target: 5'- cGGGGaAGGCGUCgGCCAGcugcuGGGCGa -3' miRNA: 3'- uCUCCgUCCGUAGgCGGUUcu---CCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 41715 | 0.69 | 0.451352 |
Target: 5'- uGGAGGUGGGCGuUUCGUCGuggcGGAGGAg- -3' miRNA: 3'- -UCUCCGUCCGU-AGGCGGU----UCUCCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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