Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 12703 | 0.69 | 0.4804 |
Target: 5'- uGGAGGCuGGCAUCgagggUGCCAcugagacggcuGAGGACc -3' miRNA: 3'- -UCUCCGuCCGUAG-----GCGGUu----------CUCCUGc -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 49971 | 0.7 | 0.395425 |
Target: 5'- uAGAGcaguggcguuucuGCGGGguUCUGCCAGGGgcGGACGu -3' miRNA: 3'- -UCUC-------------CGUCCguAGGCGGUUCU--CCUGC- -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 14560 | 0.71 | 0.353053 |
Target: 5'- cGGAGGCGGcGCGcgcggcguucgccUCCGCCucGcGGGCGg -3' miRNA: 3'- -UCUCCGUC-CGU-------------AGGCGGuuCuCCUGC- -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 14451 | 0.72 | 0.310274 |
Target: 5'- cGAGGCGGaggcgaacgccgcgcGCGccgccUCCGCCGAGcAGGGCGc -3' miRNA: 3'- uCUCCGUC---------------CGU-----AGGCGGUUC-UCCUGC- -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 29547 | 0.72 | 0.307321 |
Target: 5'- --cGGCucGGGCAUcgCCGCCAAGuGGGCa -3' miRNA: 3'- ucuCCG--UCCGUA--GGCGGUUCuCCUGc -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 24217 | 0.74 | 0.246522 |
Target: 5'- uGAGGaacacguugaAGGCGUCCGCCAGGcuGGCGc -3' miRNA: 3'- uCUCCg---------UCCGUAGGCGGUUCucCUGC- -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 72033 | 0.75 | 0.201165 |
Target: 5'- uGAGGCAuacGGCaAUCCgGCCGAuGAGGACa -3' miRNA: 3'- uCUCCGU---CCG-UAGG-CGGUU-CUCCUGc -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 26323 | 0.78 | 0.13187 |
Target: 5'- aGGGGGCGGGCAUcgCCGCCGuggcgGGccAGGACGu -3' miRNA: 3'- -UCUCCGUCCGUA--GGCGGU-----UC--UCCUGC- -5' |
|||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 48599 | 1.09 | 0.000712 |
Target: 5'- cAGAGGCAGGCAUCCGCCAAGAGGACGg -3' miRNA: 3'- -UCUCCGUCCGUAGGCGGUUCUCCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home