Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18478 | 3' | -58.1 | NC_004681.1 | + | 53036 | 0.68 | 0.530709 |
Target: 5'- -uGGGUAGGCAcUCCGCCGAGGuccucGuGCGg -3' miRNA: 3'- ucUCCGUCCGU-AGGCGGUUCU-----CcUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 57072 | 0.68 | 0.51033 |
Target: 5'- cGuGGacgaAGGCGucugccUCCGCCAGGAcGGACu -3' miRNA: 3'- uCuCCg---UCCGU------AGGCGGUUCU-CCUGc -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 57740 | 0.67 | 0.54101 |
Target: 5'- cAGAGGCagugaagaAGGUGUUCGCCGAGcuucAGG-CGa -3' miRNA: 3'- -UCUCCG--------UCCGUAGGCGGUUC----UCCuGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 63211 | 0.67 | 0.572283 |
Target: 5'- aAGAGGUucGGC-UUCGCCcGGuGGGACGu -3' miRNA: 3'- -UCUCCGu-CCGuAGGCGGuUC-UCCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 63944 | 0.67 | 0.561804 |
Target: 5'- cGAGGCaAGGC--CCGCCcGGAuuugaaccggGGACGa -3' miRNA: 3'- uCUCCG-UCCGuaGGCGGuUCU----------CCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 64610 | 0.67 | 0.593372 |
Target: 5'- uGGGGGCAgGGUGUUCGUCAGGugaccGGCGa -3' miRNA: 3'- -UCUCCGU-CCGUAGGCGGUUCuc---CUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 65006 | 0.66 | 0.657105 |
Target: 5'- -cAGGCGGGCG-CCGC-GGGAGaGAUGc -3' miRNA: 3'- ucUCCGUCCGUaGGCGgUUCUC-CUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 65897 | 0.68 | 0.500263 |
Target: 5'- cGGGGUgGGGCggCCgagGCCGAGAcGGACGa -3' miRNA: 3'- uCUCCG-UCCGuaGG---CGGUUCU-CCUGC- -5' |
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18478 | 3' | -58.1 | NC_004681.1 | + | 72033 | 0.75 | 0.201165 |
Target: 5'- uGAGGCAuacGGCaAUCCgGCCGAuGAGGACa -3' miRNA: 3'- uCUCCGU---CCG-UAGG-CGGUU-CUCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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