miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 19424 0.66 0.917362
Target:  5'- -aCGCagGCGUcugCGGCAccgAUGGCACCGUa -3'
miRNA:   3'- ugGUGa-UGUA---GCCGU---UACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 17680 0.66 0.917362
Target:  5'- uACCACggcgcuugGCcgCGGCGu---CACUGCCc -3'
miRNA:   3'- -UGGUGa-------UGuaGCCGUuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 30657 0.66 0.917362
Target:  5'- cGCCGgUAgGacUCGGUggUGGCACCuUCg -3'
miRNA:   3'- -UGGUgAUgU--AGCCGuuACUGUGGcGG- -5'
18478 5' -52.6 NC_004681.1 + 7557 0.66 0.917362
Target:  5'- gGCCugGCUGaGUCGGuCGGUcagauccucGACGCUGCCu -3'
miRNA:   3'- -UGG--UGAUgUAGCC-GUUA---------CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 9278 0.66 0.917362
Target:  5'- gGCCAgUACAUgggCGGCAAcuucuucGGCAaCGCCu -3'
miRNA:   3'- -UGGUgAUGUA---GCCGUUa------CUGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 8940 0.66 0.917362
Target:  5'- gGCCuGCUGCAgcguucgacCGGCuu---CACCGCCu -3'
miRNA:   3'- -UGG-UGAUGUa--------GCCGuuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 27009 0.66 0.917362
Target:  5'- aGCgGCUACGgauGGC----ACACCGCCu -3'
miRNA:   3'- -UGgUGAUGUag-CCGuuacUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 29647 0.66 0.911082
Target:  5'- cCCACUugG-CGGCGAUGcCcgagccggaaGCCGUCc -3'
miRNA:   3'- uGGUGAugUaGCCGUUACuG----------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 32323 0.66 0.911082
Target:  5'- gGCCgcGCUGCcgCuGCGAUGGC-CUGCUc -3'
miRNA:   3'- -UGG--UGAUGuaGcCGUUACUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 31894 0.66 0.911082
Target:  5'- uACUACUACcucgCGGCG-----GCCGCCa -3'
miRNA:   3'- -UGGUGAUGua--GCCGUuacugUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 13137 0.66 0.90453
Target:  5'- uCCAgCUugGcgauggCGGCGAUGACAgUGUCa -3'
miRNA:   3'- uGGU-GAugUa-----GCCGUUACUGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 48747 0.66 0.90453
Target:  5'- cGCCA--GCGUggaGGCGGUGuCAUUGCCg -3'
miRNA:   3'- -UGGUgaUGUAg--CCGUUACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 48772 0.66 0.90453
Target:  5'- gGCgGCUACAccUGG-AGUGAgGCCGUCg -3'
miRNA:   3'- -UGgUGAUGUa-GCCgUUACUgUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62407 0.66 0.89771
Target:  5'- -gUACUgGCAuggcUgGGCGccGACACCGCCc -3'
miRNA:   3'- ugGUGA-UGU----AgCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 22384 0.66 0.89771
Target:  5'- cGCCAUgacggGCAg-GGCGcccACGCCGCCa -3'
miRNA:   3'- -UGGUGa----UGUagCCGUuacUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 44981 0.66 0.89771
Target:  5'- aGCCcuGCUGCAuccUCGGCcucgugGGCGUCGCCc -3'
miRNA:   3'- -UGG--UGAUGU---AGCCGuua---CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 26874 0.66 0.89771
Target:  5'- cGCCAcCUAUggCGGCGAgGACAUggagcgcauUGCCg -3'
miRNA:   3'- -UGGU-GAUGuaGCCGUUaCUGUG---------GCGG- -5'
18478 5' -52.6 NC_004681.1 + 7215 0.66 0.89771
Target:  5'- gGCCGgUGC--CGGUAAcggcGACACCGCg -3'
miRNA:   3'- -UGGUgAUGuaGCCGUUa---CUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 2842 0.66 0.89771
Target:  5'- cGCCGCUACA-CGGU-----CACCGUCc -3'
miRNA:   3'- -UGGUGAUGUaGCCGuuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 5778 0.66 0.89771
Target:  5'- cGCCACcg---CGGCGAUGugGaagaacgcuggCCGCCc -3'
miRNA:   3'- -UGGUGauguaGCCGUUACugU-----------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.