miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 27009 0.66 0.917362
Target:  5'- aGCgGCUACGgauGGC----ACACCGCCu -3'
miRNA:   3'- -UGgUGAUGUag-CCGuuacUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 32323 0.66 0.911082
Target:  5'- gGCCgcGCUGCcgCuGCGAUGGC-CUGCUc -3'
miRNA:   3'- -UGG--UGAUGuaGcCGUUACUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 29647 0.66 0.911082
Target:  5'- cCCACUugG-CGGCGAUGcCcgagccggaaGCCGUCc -3'
miRNA:   3'- uGGUGAugUaGCCGUUACuG----------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 48747 0.66 0.90453
Target:  5'- cGCCA--GCGUggaGGCGGUGuCAUUGCCg -3'
miRNA:   3'- -UGGUgaUGUAg--CCGUUACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 7557 0.66 0.917362
Target:  5'- gGCCugGCUGaGUCGGuCGGUcagauccucGACGCUGCCu -3'
miRNA:   3'- -UGG--UGAUgUAGCC-GUUA---------CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 17680 0.66 0.917362
Target:  5'- uACCACggcgcuugGCcgCGGCGu---CACUGCCc -3'
miRNA:   3'- -UGGUGa-------UGuaGCCGUuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 38338 0.67 0.851395
Target:  5'- uCCug-ACA-CGGUgccuAUGGCGCCGCCg -3'
miRNA:   3'- uGGugaUGUaGCCGu---UACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 19758 0.67 0.851395
Target:  5'- gACCAgCUGCAUaCGG--AUGcCGCUGCCg -3'
miRNA:   3'- -UGGU-GAUGUA-GCCguUACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 25764 0.67 0.858079
Target:  5'- uGCCGCUgaccccggacauGCAcuuucggaucggcUCGGCGAcGAagccauuCACCGCCa -3'
miRNA:   3'- -UGGUGA------------UGU-------------AGCCGUUaCU-------GUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 30698 0.67 0.867823
Target:  5'- gGCCACgcacgcCGUCaGGCAGcGA-ACCGCCu -3'
miRNA:   3'- -UGGUGau----GUAG-CCGUUaCUgUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 14661 0.67 0.867823
Target:  5'- gGCgACUGCGgccguggUGGCGGUGGCGgcgaUGCCg -3'
miRNA:   3'- -UGgUGAUGUa------GCCGUUACUGUg---GCGG- -5'
18478 5' -52.6 NC_004681.1 + 20377 0.67 0.875675
Target:  5'- aACUGCUGCAggagCGGCGG-GACGuuGUUg -3'
miRNA:   3'- -UGGUGAUGUa---GCCGUUaCUGUggCGG- -5'
18478 5' -52.6 NC_004681.1 + 18663 0.67 0.883278
Target:  5'- aACCcucaGCaGCAUCagGGCAAcgGGCAgCCGCCu -3'
miRNA:   3'- -UGG----UGaUGUAG--CCGUUa-CUGU-GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 65160 0.67 0.851395
Target:  5'- uCCGC-GCuUCGGUcuacuacGACGCCGCCa -3'
miRNA:   3'- uGGUGaUGuAGCCGuua----CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 68502 0.67 0.859727
Target:  5'- cGCCACUgaaugGCucgCGGCAcgccugGGCGCCauGCCg -3'
miRNA:   3'- -UGGUGA-----UGua-GCCGUua----CUGUGG--CGG- -5'
18478 5' -52.6 NC_004681.1 + 72706 0.67 0.859727
Target:  5'- uCCGC-GCG-CGGUAGUGACACgGUa -3'
miRNA:   3'- uGGUGaUGUaGCCGUUACUGUGgCGg -5'
18478 5' -52.6 NC_004681.1 + 16349 0.67 0.867823
Target:  5'- uCCGCUGCGgcggugggUGGCGAcGAgGgCGCCa -3'
miRNA:   3'- uGGUGAUGUa-------GCCGUUaCUgUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 32225 0.67 0.867823
Target:  5'- gGCCAUcGCAgCGGCA---GCGCgGCCu -3'
miRNA:   3'- -UGGUGaUGUaGCCGUuacUGUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 46912 0.67 0.867823
Target:  5'- gGCgACUGguUCgcuGGCAcuaccuacgGUGAgGCCGCCg -3'
miRNA:   3'- -UGgUGAUguAG---CCGU---------UACUgUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 66172 0.67 0.867823
Target:  5'- cGCCACcACcgCgGGCAuguaccagauGUGGCGCUGCa -3'
miRNA:   3'- -UGGUGaUGuaG-CCGU----------UACUGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.