Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18478 | 5' | -52.6 | NC_004681.1 | + | 48634 | 1.12 | 0.001831 |
Target: 5'- uACCACUACAUCGGCAAUGACACCGCCu -3' miRNA: 3'- -UGGUGAUGUAGCCGUUACUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 25689 | 0.8 | 0.233892 |
Target: 5'- gGCCAg-GCGUCGGCcuguacGUGACAUCGCCg -3' miRNA: 3'- -UGGUgaUGUAGCCGu-----UACUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 2902 | 0.8 | 0.248885 |
Target: 5'- gACCcCUACAUCcugggggccuggcugGGCGAcGGCACCGCCa -3' miRNA: 3'- -UGGuGAUGUAG---------------CCGUUaCUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 61205 | 0.77 | 0.340781 |
Target: 5'- uCCGCUGCAccaUCuGGCGc-GACGCCGCCg -3' miRNA: 3'- uGGUGAUGU---AG-CCGUuaCUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 10471 | 0.77 | 0.349043 |
Target: 5'- cCCAUggaacGCAUCGGUGAgGACACCGUCa -3' miRNA: 3'- uGGUGa----UGUAGCCGUUaCUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 26384 | 0.77 | 0.349043 |
Target: 5'- gGCCACgucggAUGagucUCGGUggUGAUGCCGCCg -3' miRNA: 3'- -UGGUGa----UGU----AGCCGuuACUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 5424 | 0.75 | 0.420136 |
Target: 5'- cGCCugUGCGcgcUUGGCAAUGACuguCCGUa -3' miRNA: 3'- -UGGugAUGU---AGCCGUUACUGu--GGCGg -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 16025 | 0.74 | 0.468777 |
Target: 5'- cCgGCUGC--UGGCAagGGCGCCGCCg -3' miRNA: 3'- uGgUGAUGuaGCCGUuaCUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 1418 | 0.74 | 0.499309 |
Target: 5'- gGCCACgaaUACA-CGGCcauUGGCGCCGCg -3' miRNA: 3'- -UGGUG---AUGUaGCCGuu-ACUGUGGCGg -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 56147 | 0.73 | 0.520145 |
Target: 5'- cACCGCcGCAUCaaGGCGAUGAagcucCGCgGCCa -3' miRNA: 3'- -UGGUGaUGUAG--CCGUUACU-----GUGgCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 41043 | 0.73 | 0.573576 |
Target: 5'- aGCCACccaUGCGaCGGCccucuucGGCGCCGCCg -3' miRNA: 3'- -UGGUG---AUGUaGCCGuua----CUGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 27957 | 0.73 | 0.562764 |
Target: 5'- cGCCACcguUcgCGGUAAUGACgacGCUGCCg -3' miRNA: 3'- -UGGUGau-GuaGCCGUUACUG---UGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 37073 | 0.73 | 0.541315 |
Target: 5'- uCCACUcguGCAagGGCGuuccgGUGACGgCCGCCg -3' miRNA: 3'- uGGUGA---UGUagCCGU-----UACUGU-GGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 16840 | 0.72 | 0.595333 |
Target: 5'- gACCGgaGCGUCaGGCAGcuUGACGgUGCCa -3' miRNA: 3'- -UGGUgaUGUAG-CCGUU--ACUGUgGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 62264 | 0.72 | 0.62818 |
Target: 5'- cACCGCgcCGggGGCAAgauCACCGCCg -3' miRNA: 3'- -UGGUGauGUagCCGUUacuGUGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 22802 | 0.72 | 0.62818 |
Target: 5'- gGCCGCUACuaCGGCAucgccggGGCGaccCCGCCu -3' miRNA: 3'- -UGGUGAUGuaGCCGUua-----CUGU---GGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 51297 | 0.72 | 0.617215 |
Target: 5'- gACCuCUACAU-GGcCGGUGAguCCGCCg -3' miRNA: 3'- -UGGuGAUGUAgCC-GUUACUguGGCGG- -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 31994 | 0.72 | 0.617215 |
Target: 5'- cGCCA--GCAUCGGCucgcuGAUcGGCGCCGCg -3' miRNA: 3'- -UGGUgaUGUAGCCG-----UUA-CUGUGGCGg -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 18731 | 0.72 | 0.584435 |
Target: 5'- cGCCAaggGCGaCGGCGgcgaggccgcgcGUGACACCGCa -3' miRNA: 3'- -UGGUga-UGUaGCCGU------------UACUGUGGCGg -5' |
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18478 | 5' | -52.6 | NC_004681.1 | + | 8283 | 0.72 | 0.595333 |
Target: 5'- aGCCu---CggUGGCGcgGACGCCGCCa -3' miRNA: 3'- -UGGugauGuaGCCGUuaCUGUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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