miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 34557 0.71 0.639149
Target:  5'- uGCCACggcaggucauCGUCGGC---GGCACCGUCa -3'
miRNA:   3'- -UGGUGau--------GUAGCCGuuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62089 0.71 0.643535
Target:  5'- gGCCGCgaucugGUCGaacaggugcaugcccGCGAUGACGCUGCCg -3'
miRNA:   3'- -UGGUGaug---UAGC---------------CGUUACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 74209 0.71 0.650111
Target:  5'- gGCCACgACGUUGGUuccguggauAcgGACuCCGCCg -3'
miRNA:   3'- -UGGUGaUGUAGCCG---------UuaCUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 3920 0.71 0.650111
Target:  5'- uACCACUGC--CGGUAAcGACACCGa- -3'
miRNA:   3'- -UGGUGAUGuaGCCGUUaCUGUGGCgg -5'
18478 5' -52.6 NC_004681.1 + 10373 0.71 0.650111
Target:  5'- cGCCGCU---UCGGCAGUGuCGCUGgCa -3'
miRNA:   3'- -UGGUGAuguAGCCGUUACuGUGGCgG- -5'
18478 5' -52.6 NC_004681.1 + 27004 0.71 0.655586
Target:  5'- cGCCGCUGugauacuCAaCGGCAAUGcgcuccauguccuCGCCGCCa -3'
miRNA:   3'- -UGGUGAU-------GUaGCCGUUACu------------GUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 17541 0.71 0.676333
Target:  5'- gGCCACgcucccugGCggCacccccuucaacuggGGCAGUGACGCCGCg -3'
miRNA:   3'- -UGGUGa-------UGuaG---------------CCGUUACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 24716 0.7 0.715169
Target:  5'- uGCCAUgggucgGCAUC-GCAGUcGACACCGgCa -3'
miRNA:   3'- -UGGUGa-----UGUAGcCGUUA-CUGUGGCgG- -5'
18478 5' -52.6 NC_004681.1 + 26221 0.7 0.715169
Target:  5'- cCCGCcACggCGGCGAUG-C-CCGCCc -3'
miRNA:   3'- uGGUGaUGuaGCCGUUACuGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 24832 0.7 0.715169
Target:  5'- gACCucaucgGCGUCGGCGGcgcgGGCggcgGCCGCCa -3'
miRNA:   3'- -UGGuga---UGUAGCCGUUa---CUG----UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 44801 0.7 0.715169
Target:  5'- gACgCGCUugGUgcGC-GUGACGCCGCCg -3'
miRNA:   3'- -UG-GUGAugUAgcCGuUACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 392 0.7 0.725792
Target:  5'- gACCugggGCAagGGCAccGGCACCGUCu -3'
miRNA:   3'- -UGGuga-UGUagCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 39375 0.7 0.736323
Target:  5'- gGCCGCgcACAUCGGgGAguacuUGACGCgGCg -3'
miRNA:   3'- -UGGUGa-UGUAGCCgUU-----ACUGUGgCGg -5'
18478 5' -52.6 NC_004681.1 + 12037 0.69 0.744672
Target:  5'- uACCGCcagaucguuguCAUCGGCGuUGACgGCCGCa -3'
miRNA:   3'- -UGGUGau---------GUAGCCGUuACUG-UGGCGg -5'
18478 5' -52.6 NC_004681.1 + 16700 0.69 0.750888
Target:  5'- gGCCugUucccggguaugacggGCggUGGCAgcgAUGGCACCGUCa -3'
miRNA:   3'- -UGGugA---------------UGuaGCCGU---UACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 23591 0.69 0.75706
Target:  5'- gGCUACgaggGCA-CGGgGGUGGCcauCCGCCu -3'
miRNA:   3'- -UGGUGa---UGUaGCCgUUACUGu--GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 60619 0.69 0.767244
Target:  5'- gGCCcguCUcgGUCGGgaaGAUGugACCGCCa -3'
miRNA:   3'- -UGGu--GAugUAGCCg--UUACugUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 61537 0.69 0.767244
Target:  5'- cCCACUuguugGCGUCGGCuuccuUGAacgaggaGCUGCCg -3'
miRNA:   3'- uGGUGA-----UGUAGCCGuu---ACUg------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 23441 0.69 0.776291
Target:  5'- gGCCACUcccGCAguucugaUgGGUcg-GGCGCCGCCa -3'
miRNA:   3'- -UGGUGA---UGU-------AgCCGuuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 49520 0.69 0.77729
Target:  5'- gGCCAUggucgACAagGGUGccGACAUCGCCc -3'
miRNA:   3'- -UGGUGa----UGUagCCGUuaCUGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.