miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 16004 0.66 0.897013
Target:  5'- gACCGCggcCA-CGGCGaucuucacgGUGACccacgcgGCCGCCa -3'
miRNA:   3'- -UGGUGau-GUaGCCGU---------UACUG-------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 3874 0.66 0.894907
Target:  5'- cCCAgUGCAgacuucgcgucagCGGCGAUGACGUCGUa -3'
miRNA:   3'- uGGUgAUGUa------------GCCGUUACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 39244 0.66 0.890624
Target:  5'- cGCCGCgGCAagGGCGccaaGgGCCGCCg -3'
miRNA:   3'- -UGGUGaUGUagCCGUuac-UgUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 27291 0.66 0.890624
Target:  5'- aACCGCUggGCGUCcaucGCGGUGAacauCACCGUg -3'
miRNA:   3'- -UGGUGA--UGUAGc---CGUUACU----GUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 63290 0.66 0.890624
Target:  5'- gGCCGCgauaucGCcUCGGUGAUGuCGUCGCCu -3'
miRNA:   3'- -UGGUGa-----UGuAGCCGUUACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 59676 0.66 0.890624
Target:  5'- aGCCA--ACAU-GGCA---GCGCCGCCa -3'
miRNA:   3'- -UGGUgaUGUAgCCGUuacUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 14490 0.67 0.883278
Target:  5'- -gCGCUugGCGUCGGCGAUGcgguuCuCCGCg -3'
miRNA:   3'- ugGUGA--UGUAGCCGUUACu----GuGGCGg -5'
18478 5' -52.6 NC_004681.1 + 9191 0.67 0.883278
Target:  5'- aGCCAgcgGCGcCGGUGAcGACGCgGCCa -3'
miRNA:   3'- -UGGUga-UGUaGCCGUUaCUGUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 45517 0.67 0.883278
Target:  5'- cCUACUACAagGGCGAcGACgGCgGCUg -3'
miRNA:   3'- uGGUGAUGUagCCGUUaCUG-UGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 18663 0.67 0.883278
Target:  5'- aACCcucaGCaGCAUCagGGCAAcgGGCAgCCGCCu -3'
miRNA:   3'- -UGG----UGaUGUAG--CCGUUa-CUGU-GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 48569 0.67 0.881023
Target:  5'- aGCCcuGCUGCAUCGugggccacgcccucGCAGaGGCAggcauCCGCCa -3'
miRNA:   3'- -UGG--UGAUGUAGC--------------CGUUaCUGU-----GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 20560 0.67 0.875675
Target:  5'- cGCCGC-ACAaauggCGGCGcUGGCGgaaaucaauCCGCCa -3'
miRNA:   3'- -UGGUGaUGUa----GCCGUuACUGU---------GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 20377 0.67 0.875675
Target:  5'- aACUGCUGCAggagCGGCGG-GACGuuGUUg -3'
miRNA:   3'- -UGGUGAUGUa---GCCGUUaCUGUggCGG- -5'
18478 5' -52.6 NC_004681.1 + 28922 0.67 0.875675
Target:  5'- uGCCugcgcCUGCcaGUCGGUAuAUGACgagGCUGCCg -3'
miRNA:   3'- -UGGu----GAUG--UAGCCGU-UACUG---UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16657 0.67 0.875675
Target:  5'- -gCGCU-CGUCGGCAAgcuGCauaccacgGCCGCCg -3'
miRNA:   3'- ugGUGAuGUAGCCGUUac-UG--------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 14661 0.67 0.867823
Target:  5'- gGCgACUGCGgccguggUGGCGGUGGCGgcgaUGCCg -3'
miRNA:   3'- -UGgUGAUGUa------GCCGUUACUGUg---GCGG- -5'
18478 5' -52.6 NC_004681.1 + 16349 0.67 0.867823
Target:  5'- uCCGCUGCGgcggugggUGGCGAcGAgGgCGCCa -3'
miRNA:   3'- uGGUGAUGUa-------GCCGUUaCUgUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 32225 0.67 0.867823
Target:  5'- gGCCAUcGCAgCGGCA---GCGCgGCCu -3'
miRNA:   3'- -UGGUGaUGUaGCCGUuacUGUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 46912 0.67 0.867823
Target:  5'- gGCgACUGguUCgcuGGCAcuaccuacgGUGAgGCCGCCg -3'
miRNA:   3'- -UGgUGAUguAG---CCGU---------UACUgUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 66172 0.67 0.867823
Target:  5'- cGCCACcACcgCgGGCAuguaccagauGUGGCGCUGCa -3'
miRNA:   3'- -UGGUGaUGuaG-CCGU----------UACUGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.