miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 30698 0.67 0.867823
Target:  5'- gGCCACgcacgcCGUCaGGCAGcGA-ACCGCCu -3'
miRNA:   3'- -UGGUGau----GUAG-CCGUUaCUgUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 14661 0.67 0.867823
Target:  5'- gGCgACUGCGgccguggUGGCGGUGGCGgcgaUGCCg -3'
miRNA:   3'- -UGgUGAUGUa------GCCGUUACUGUg---GCGG- -5'
18478 5' -52.6 NC_004681.1 + 9029 0.67 0.859727
Target:  5'- -aCGCUGCAgcaGGCcguUGACgccgggguacccGCCGCCa -3'
miRNA:   3'- ugGUGAUGUag-CCGuu-ACUG------------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 72706 0.67 0.859727
Target:  5'- uCCGC-GCG-CGGUAGUGACACgGUa -3'
miRNA:   3'- uGGUGaUGUaGCCGUUACUGUGgCGg -5'
18478 5' -52.6 NC_004681.1 + 68502 0.67 0.859727
Target:  5'- cGCCACUgaaugGCucgCGGCAcgccugGGCGCCauGCCg -3'
miRNA:   3'- -UGGUGA-----UGua-GCCGUua----CUGUGG--CGG- -5'
18478 5' -52.6 NC_004681.1 + 25764 0.67 0.858079
Target:  5'- uGCCGCUgaccccggacauGCAcuuucggaucggcUCGGCGAcGAagccauuCACCGCCa -3'
miRNA:   3'- -UGGUGA------------UGU-------------AGCCGUUaCU-------GUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 9040 0.67 0.858079
Target:  5'- cACCAacggugcguuCGUCGGCcagGACACUGUCg -3'
miRNA:   3'- -UGGUgau-------GUAGCCGuuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 65160 0.67 0.851395
Target:  5'- uCCGC-GCuUCGGUcuacuacGACGCCGCCa -3'
miRNA:   3'- uGGUGaUGuAGCCGuua----CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 30141 0.67 0.851395
Target:  5'- gGCCugUGgGUCGGgcuCAGgcGGCGCgGCCg -3'
miRNA:   3'- -UGGugAUgUAGCC---GUUa-CUGUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 19758 0.67 0.851395
Target:  5'- gACCAgCUGCAUaCGG--AUGcCGCUGCCg -3'
miRNA:   3'- -UGGU-GAUGUA-GCCguUACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 38338 0.67 0.851395
Target:  5'- uCCug-ACA-CGGUgccuAUGGCGCCGCCg -3'
miRNA:   3'- uGGugaUGUaGCCGu---UACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 14572 0.67 0.851395
Target:  5'- cGCC-CUGC-UCGGCGGaGGCGgCGCg -3'
miRNA:   3'- -UGGuGAUGuAGCCGUUaCUGUgGCGg -5'
18478 5' -52.6 NC_004681.1 + 60385 0.68 0.846286
Target:  5'- uGCCgcGCUGCAUCagucgccggGGCAGUGACcaggcguugcuuguCUGCCu -3'
miRNA:   3'- -UGG--UGAUGUAG---------CCGUUACUGu-------------GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 32785 0.68 0.837593
Target:  5'- aGCCGCgcgACGUCGGCGggguacccggaccacAUGuCGgcccagguccCCGCCa -3'
miRNA:   3'- -UGGUGa--UGUAGCCGU---------------UACuGU----------GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 51492 0.68 0.834055
Target:  5'- gACCGCUGCcgccagcUCGGCuacaccGACGCCaCCa -3'
miRNA:   3'- -UGGUGAUGu------AGCCGuua---CUGUGGcGG- -5'
18478 5' -52.6 NC_004681.1 + 49465 0.68 0.834055
Target:  5'- cCCGCUACAaggaCGGCAAgcccUACUGCCc -3'
miRNA:   3'- uGGUGAUGUa---GCCGUUacu-GUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 63955 0.68 0.834055
Target:  5'- gACCACggGCGcgaGGCAA-GGC-CCGCCc -3'
miRNA:   3'- -UGGUGa-UGUag-CCGUUaCUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 27744 0.68 0.834055
Target:  5'- aACCGgagUUGgAUCGGCGAccaGAgcCGCCGCCg -3'
miRNA:   3'- -UGGU---GAUgUAGCCGUUa--CU--GUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 41575 0.68 0.825065
Target:  5'- cGCCACcccgcagGCAgcgcaCGGCGAUGAacgaacuccuCCGCCa -3'
miRNA:   3'- -UGGUGa------UGUa----GCCGUUACUgu--------GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 35467 0.68 0.825065
Target:  5'- aGCCACgUGCG-CGGU-GUGuACGCCGUCg -3'
miRNA:   3'- -UGGUG-AUGUaGCCGuUAC-UGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.