miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 392 0.7 0.725792
Target:  5'- gACCugggGCAagGGCAccGGCACCGUCu -3'
miRNA:   3'- -UGGuga-UGUagCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 1418 0.74 0.499309
Target:  5'- gGCCACgaaUACA-CGGCcauUGGCGCCGCg -3'
miRNA:   3'- -UGGUG---AUGUaGCCGuu-ACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 2842 0.66 0.89771
Target:  5'- cGCCGCUACA-CGGU-----CACCGUCc -3'
miRNA:   3'- -UGGUGAUGUaGCCGuuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 2902 0.8 0.248885
Target:  5'- gACCcCUACAUCcugggggccuggcugGGCGAcGGCACCGCCa -3'
miRNA:   3'- -UGGuGAUGUAG---------------CCGUUaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 3015 0.69 0.77729
Target:  5'- uACgACUACGccagCGGCAAUGcccgcacccGCGgCGCCa -3'
miRNA:   3'- -UGgUGAUGUa---GCCGUUAC---------UGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 3874 0.66 0.894907
Target:  5'- cCCAgUGCAgacuucgcgucagCGGCGAUGACGUCGUa -3'
miRNA:   3'- uGGUgAUGUa------------GCCGUUACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 3920 0.71 0.650111
Target:  5'- uACCACUGC--CGGUAAcGACACCGa- -3'
miRNA:   3'- -UGGUGAUGuaGCCGUUaCUGUGGCgg -5'
18478 5' -52.6 NC_004681.1 + 5424 0.75 0.420136
Target:  5'- cGCCugUGCGcgcUUGGCAAUGACuguCCGUa -3'
miRNA:   3'- -UGGugAUGU---AGCCGUUACUGu--GGCGg -5'
18478 5' -52.6 NC_004681.1 + 5778 0.66 0.89771
Target:  5'- cGCCACcg---CGGCGAUGugGaagaacgcuggCCGCCc -3'
miRNA:   3'- -UGGUGauguaGCCGUUACugU-----------GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 7215 0.66 0.89771
Target:  5'- gGCCGgUGC--CGGUAAcggcGACACCGCg -3'
miRNA:   3'- -UGGUgAUGuaGCCGUUa---CUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 7266 0.68 0.806488
Target:  5'- gGCCGuCcACcUCGGCGccgaGUG-CGCCGCCu -3'
miRNA:   3'- -UGGU-GaUGuAGCCGU----UACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 7557 0.66 0.917362
Target:  5'- gGCCugGCUGaGUCGGuCGGUcagauccucGACGCUGCCu -3'
miRNA:   3'- -UGG--UGAUgUAGCC-GUUA---------CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 8283 0.72 0.595333
Target:  5'- aGCCu---CggUGGCGcgGACGCCGCCa -3'
miRNA:   3'- -UGGugauGuaGCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 8940 0.66 0.917362
Target:  5'- gGCCuGCUGCAgcguucgacCGGCuu---CACCGCCu -3'
miRNA:   3'- -UGG-UGAUGUa--------GCCGuuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 9029 0.67 0.859727
Target:  5'- -aCGCUGCAgcaGGCcguUGACgccgggguacccGCCGCCa -3'
miRNA:   3'- ugGUGAUGUag-CCGuu-ACUG------------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 9040 0.67 0.858079
Target:  5'- cACCAacggugcguuCGUCGGCcagGACACUGUCg -3'
miRNA:   3'- -UGGUgau-------GUAGCCGuuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 9191 0.67 0.883278
Target:  5'- aGCCAgcgGCGcCGGUGAcGACGCgGCCa -3'
miRNA:   3'- -UGGUga-UGUaGCCGUUaCUGUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 9278 0.66 0.917362
Target:  5'- gGCCAgUACAUgggCGGCAAcuucuucGGCAaCGCCu -3'
miRNA:   3'- -UGGUgAUGUA---GCCGUUa------CUGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 10373 0.71 0.650111
Target:  5'- cGCCGCU---UCGGCAGUGuCGCUGgCa -3'
miRNA:   3'- -UGGUGAuguAGCCGUUACuGUGGCgG- -5'
18478 5' -52.6 NC_004681.1 + 10471 0.77 0.349043
Target:  5'- cCCAUggaacGCAUCGGUGAgGACACCGUCa -3'
miRNA:   3'- uGGUGa----UGUAGCCGUUaCUGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.