miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 11895 0.69 0.796923
Target:  5'- uCCACgcCGuccUCGGUGAUGGCACCGaUCu -3'
miRNA:   3'- uGGUGauGU---AGCCGUUACUGUGGC-GG- -5'
18478 5' -52.6 NC_004681.1 + 12037 0.69 0.744672
Target:  5'- uACCGCcagaucguuguCAUCGGCGuUGACgGCCGCa -3'
miRNA:   3'- -UGGUGau---------GUAGCCGUuACUG-UGGCGg -5'
18478 5' -52.6 NC_004681.1 + 12498 0.67 0.867823
Target:  5'- gACCGCggaagGCAgcaaCGGCGAg---ACCGCCg -3'
miRNA:   3'- -UGGUGa----UGUa---GCCGUUacugUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 12722 0.69 0.796923
Target:  5'- uGCCACUGagaCGGCugagGACcacacccauACCGCCa -3'
miRNA:   3'- -UGGUGAUguaGCCGuua-CUG---------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 12997 0.68 0.825065
Target:  5'- cACCGCUggcACcgCGGaCGAcGugGCCGCg -3'
miRNA:   3'- -UGGUGA---UGuaGCC-GUUaCugUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 13137 0.66 0.90453
Target:  5'- uCCAgCUugGcgauggCGGCGAUGACAgUGUCa -3'
miRNA:   3'- uGGU-GAugUa-----GCCGUUACUGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 14490 0.67 0.883278
Target:  5'- -gCGCUugGCGUCGGCGAUGcgguuCuCCGCg -3'
miRNA:   3'- ugGUGA--UGUAGCCGUUACu----GuGGCGg -5'
18478 5' -52.6 NC_004681.1 + 14572 0.67 0.851395
Target:  5'- cGCC-CUGC-UCGGCGGaGGCGgCGCg -3'
miRNA:   3'- -UGGuGAUGuAGCCGUUaCUGUgGCGg -5'
18478 5' -52.6 NC_004681.1 + 14661 0.67 0.867823
Target:  5'- gGCgACUGCGgccguggUGGCGGUGGCGgcgaUGCCg -3'
miRNA:   3'- -UGgUGAUGUa------GCCGUUACUGUg---GCGG- -5'
18478 5' -52.6 NC_004681.1 + 16004 0.66 0.897013
Target:  5'- gACCGCggcCA-CGGCGaucuucacgGUGACccacgcgGCCGCCa -3'
miRNA:   3'- -UGGUGau-GUaGCCGU---------UACUG-------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16025 0.74 0.468777
Target:  5'- cCgGCUGC--UGGCAagGGCGCCGCCg -3'
miRNA:   3'- uGgUGAUGuaGCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16195 0.69 0.787186
Target:  5'- gGCgGCUgugcgcGCcgCGGUggUGACGCCaCCg -3'
miRNA:   3'- -UGgUGA------UGuaGCCGuuACUGUGGcGG- -5'
18478 5' -52.6 NC_004681.1 + 16349 0.67 0.867823
Target:  5'- uCCGCUGCGgcggugggUGGCGAcGAgGgCGCCa -3'
miRNA:   3'- uGGUGAUGUa-------GCCGUUaCUgUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16657 0.67 0.875675
Target:  5'- -gCGCU-CGUCGGCAAgcuGCauaccacgGCCGCCg -3'
miRNA:   3'- ugGUGAuGUAGCCGUUac-UG--------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16700 0.69 0.750888
Target:  5'- gGCCugUucccggguaugacggGCggUGGCAgcgAUGGCACCGUCa -3'
miRNA:   3'- -UGGugA---------------UGuaGCCGU---UACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16840 0.72 0.595333
Target:  5'- gACCGgaGCGUCaGGCAGcuUGACGgUGCCa -3'
miRNA:   3'- -UGGUgaUGUAG-CCGUU--ACUGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 17541 0.71 0.676333
Target:  5'- gGCCACgcucccugGCggCacccccuucaacuggGGCAGUGACGCCGCg -3'
miRNA:   3'- -UGGUGa-------UGuaG---------------CCGUUACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 17680 0.66 0.917362
Target:  5'- uACCACggcgcuugGCcgCGGCGu---CACUGCCc -3'
miRNA:   3'- -UGGUGa-------UGuaGCCGUuacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 18081 0.68 0.815872
Target:  5'- cCCGCggguauggGCAUCGGCAuccccGGCAUCGgCg -3'
miRNA:   3'- uGGUGa-------UGUAGCCGUua---CUGUGGCgG- -5'
18478 5' -52.6 NC_004681.1 + 18663 0.67 0.883278
Target:  5'- aACCcucaGCaGCAUCagGGCAAcgGGCAgCCGCCu -3'
miRNA:   3'- -UGG----UGaUGUAG--CCGUUa-CUGU-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.