miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 74209 0.71 0.650111
Target:  5'- gGCCACgACGUUGGUuccguggauAcgGACuCCGCCg -3'
miRNA:   3'- -UGGUGaUGUAGCCG---------UuaCUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 72706 0.67 0.859727
Target:  5'- uCCGC-GCG-CGGUAGUGACACgGUa -3'
miRNA:   3'- uGGUGaUGUaGCCGUUACUGUGgCGg -5'
18478 5' -52.6 NC_004681.1 + 68502 0.67 0.859727
Target:  5'- cGCCACUgaaugGCucgCGGCAcgccugGGCGCCauGCCg -3'
miRNA:   3'- -UGGUGA-----UGua-GCCGUua----CUGUGG--CGG- -5'
18478 5' -52.6 NC_004681.1 + 67680 0.68 0.824154
Target:  5'- cCUACUgaagaacgACGUCGGCAccGACgacaaggGCCGCUg -3'
miRNA:   3'- uGGUGA--------UGUAGCCGUuaCUG-------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 66172 0.67 0.867823
Target:  5'- cGCCACcACcgCgGGCAuguaccagauGUGGCGCUGCa -3'
miRNA:   3'- -UGGUGaUGuaG-CCGU----------UACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 65160 0.67 0.851395
Target:  5'- uCCGC-GCuUCGGUcuacuacGACGCCGCCa -3'
miRNA:   3'- uGGUGaUGuAGCCGuua----CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 63955 0.68 0.834055
Target:  5'- gACCACggGCGcgaGGCAA-GGC-CCGCCc -3'
miRNA:   3'- -UGGUGa-UGUag-CCGUUaCUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 63290 0.66 0.890624
Target:  5'- gGCCGCgauaucGCcUCGGUGAUGuCGUCGCCu -3'
miRNA:   3'- -UGGUGa-----UGuAGCCGUUACuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62407 0.66 0.89771
Target:  5'- -gUACUgGCAuggcUgGGCGccGACACCGCCc -3'
miRNA:   3'- ugGUGA-UGU----AgCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62264 0.72 0.62818
Target:  5'- cACCGCgcCGggGGCAAgauCACCGCCg -3'
miRNA:   3'- -UGGUGauGUagCCGUUacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62089 0.71 0.643535
Target:  5'- gGCCGCgaucugGUCGaacaggugcaugcccGCGAUGACGCUGCCg -3'
miRNA:   3'- -UGGUGaug---UAGC---------------CGUUACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 61901 0.69 0.796923
Target:  5'- aACCA----GUUGGCGcuGUGGCACCGCg -3'
miRNA:   3'- -UGGUgaugUAGCCGU--UACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 61667 0.68 0.806488
Target:  5'- aGCCGCcGCcgCGGag--GcCGCCGCCg -3'
miRNA:   3'- -UGGUGaUGuaGCCguuaCuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 61537 0.69 0.767244
Target:  5'- cCCACUuguugGCGUCGGCuuccuUGAacgaggaGCUGCCg -3'
miRNA:   3'- uGGUGA-----UGUAGCCGuu---ACUg------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 61205 0.77 0.340781
Target:  5'- uCCGCUGCAccaUCuGGCGc-GACGCCGCCg -3'
miRNA:   3'- uGGUGAUGU---AG-CCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 60619 0.69 0.767244
Target:  5'- gGCCcguCUcgGUCGGgaaGAUGugACCGCCa -3'
miRNA:   3'- -UGGu--GAugUAGCCg--UUACugUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 60385 0.68 0.846286
Target:  5'- uGCCgcGCUGCAUCagucgccggGGCAGUGACcaggcguugcuuguCUGCCu -3'
miRNA:   3'- -UGG--UGAUGUAG---------CCGUUACUGu-------------GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 59676 0.66 0.890624
Target:  5'- aGCCA--ACAU-GGCA---GCGCCGCCa -3'
miRNA:   3'- -UGGUgaUGUAgCCGUuacUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 56147 0.73 0.520145
Target:  5'- cACCGCcGCAUCaaGGCGAUGAagcucCGCgGCCa -3'
miRNA:   3'- -UGGUGaUGUAG--CCGUUACU-----GUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 51492 0.68 0.834055
Target:  5'- gACCGCUGCcgccagcUCGGCuacaccGACGCCaCCa -3'
miRNA:   3'- -UGGUGAUGu------AGCCGuua---CUGUGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.