miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 24832 0.7 0.715169
Target:  5'- gACCucaucgGCGUCGGCGGcgcgGGCggcgGCCGCCa -3'
miRNA:   3'- -UGGuga---UGUAGCCGUUa---CUG----UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 51297 0.72 0.617215
Target:  5'- gACCuCUACAU-GGcCGGUGAguCCGCCg -3'
miRNA:   3'- -UGGuGAUGUAgCC-GUUACUguGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 22802 0.72 0.62818
Target:  5'- gGCCGCUACuaCGGCAucgccggGGCGaccCCGCCu -3'
miRNA:   3'- -UGGUGAUGuaGCCGUua-----CUGU---GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62264 0.72 0.62818
Target:  5'- cACCGCgcCGggGGCAAgauCACCGCCg -3'
miRNA:   3'- -UGGUGauGUagCCGUUacuGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 3920 0.71 0.650111
Target:  5'- uACCACUGC--CGGUAAcGACACCGa- -3'
miRNA:   3'- -UGGUGAUGuaGCCGUUaCUGUGGCgg -5'
18478 5' -52.6 NC_004681.1 + 10373 0.71 0.650111
Target:  5'- cGCCGCU---UCGGCAGUGuCGCUGgCa -3'
miRNA:   3'- -UGGUGAuguAGCCGUUACuGUGGCgG- -5'
18478 5' -52.6 NC_004681.1 + 74209 0.71 0.650111
Target:  5'- gGCCACgACGUUGGUuccguggauAcgGACuCCGCCg -3'
miRNA:   3'- -UGGUGaUGUAGCCG---------UuaCUGuGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 17541 0.71 0.676333
Target:  5'- gGCCACgcucccugGCggCacccccuucaacuggGGCAGUGACGCCGCg -3'
miRNA:   3'- -UGGUGa-------UGuaG---------------CCGUUACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 24716 0.7 0.715169
Target:  5'- uGCCAUgggucgGCAUC-GCAGUcGACACCGgCa -3'
miRNA:   3'- -UGGUGa-----UGUAGcCGUUA-CUGUGGCgG- -5'
18478 5' -52.6 NC_004681.1 + 31994 0.72 0.617215
Target:  5'- cGCCA--GCAUCGGCucgcuGAUcGGCGCCGCg -3'
miRNA:   3'- -UGGUgaUGUAGCCG-----UUA-CUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 8283 0.72 0.595333
Target:  5'- aGCCu---CggUGGCGcgGACGCCGCCa -3'
miRNA:   3'- -UGGugauGuaGCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 18731 0.72 0.584435
Target:  5'- cGCCAaggGCGaCGGCGgcgaggccgcgcGUGACACCGCa -3'
miRNA:   3'- -UGGUga-UGUaGCCGU------------UACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 25689 0.8 0.233892
Target:  5'- gGCCAg-GCGUCGGCcuguacGUGACAUCGCCg -3'
miRNA:   3'- -UGGUgaUGUAGCCGu-----UACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 2902 0.8 0.248885
Target:  5'- gACCcCUACAUCcugggggccuggcugGGCGAcGGCACCGCCa -3'
miRNA:   3'- -UGGuGAUGUAG---------------CCGUUaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 61205 0.77 0.340781
Target:  5'- uCCGCUGCAccaUCuGGCGc-GACGCCGCCg -3'
miRNA:   3'- uGGUGAUGU---AG-CCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 10471 0.77 0.349043
Target:  5'- cCCAUggaacGCAUCGGUGAgGACACCGUCa -3'
miRNA:   3'- uGGUGa----UGUAGCCGUUaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16025 0.74 0.468777
Target:  5'- cCgGCUGC--UGGCAagGGCGCCGCCg -3'
miRNA:   3'- uGgUGAUGuaGCCGUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 1418 0.74 0.499309
Target:  5'- gGCCACgaaUACA-CGGCcauUGGCGCCGCg -3'
miRNA:   3'- -UGGUG---AUGUaGCCGuu-ACUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 56147 0.73 0.520145
Target:  5'- cACCGCcGCAUCaaGGCGAUGAagcucCGCgGCCa -3'
miRNA:   3'- -UGGUGaUGUAG--CCGUUACU-----GUGgCGG- -5'
18478 5' -52.6 NC_004681.1 + 41043 0.73 0.573576
Target:  5'- aGCCACccaUGCGaCGGCccucuucGGCGCCGCCg -3'
miRNA:   3'- -UGGUG---AUGUaGCCGuua----CUGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.