miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18478 5' -52.6 NC_004681.1 + 26384 0.77 0.349043
Target:  5'- gGCCACgucggAUGagucUCGGUggUGAUGCCGCCg -3'
miRNA:   3'- -UGGUGa----UGU----AGCCGuuACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 11895 0.69 0.796923
Target:  5'- uCCACgcCGuccUCGGUGAUGGCACCGaUCu -3'
miRNA:   3'- uGGUGauGU---AGCCGUUACUGUGGC-GG- -5'
18478 5' -52.6 NC_004681.1 + 28247 0.68 0.815872
Target:  5'- uGCCGCUGCcgCcGCuc-GAUccGCCGCCg -3'
miRNA:   3'- -UGGUGAUGuaGcCGuuaCUG--UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 7557 0.66 0.917362
Target:  5'- gGCCugGCUGaGUCGGuCGGUcagauccucGACGCUGCCu -3'
miRNA:   3'- -UGG--UGAUgUAGCC-GUUA---------CUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 16840 0.72 0.595333
Target:  5'- gACCGgaGCGUCaGGCAGcuUGACGgUGCCa -3'
miRNA:   3'- -UGGUgaUGUAG-CCGUU--ACUGUgGCGG- -5'
18478 5' -52.6 NC_004681.1 + 34557 0.71 0.639149
Target:  5'- uGCCACggcaggucauCGUCGGC---GGCACCGUCa -3'
miRNA:   3'- -UGGUGau--------GUAGCCGuuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 27004 0.71 0.655586
Target:  5'- cGCCGCUGugauacuCAaCGGCAAUGcgcuccauguccuCGCCGCCa -3'
miRNA:   3'- -UGGUGAU-------GUaGCCGUUACu------------GUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 44801 0.7 0.715169
Target:  5'- gACgCGCUugGUgcGC-GUGACGCCGCCg -3'
miRNA:   3'- -UG-GUGAugUAgcCGuUACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 61537 0.69 0.767244
Target:  5'- cCCACUuguugGCGUCGGCuuccuUGAacgaggaGCUGCCg -3'
miRNA:   3'- uGGUGA-----UGUAGCCGuu---ACUg------UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 30371 0.69 0.796923
Target:  5'- cACCACgg-AUCGGUggUcucGACGCCGUa -3'
miRNA:   3'- -UGGUGaugUAGCCGuuA---CUGUGGCGg -5'
18478 5' -52.6 NC_004681.1 + 26333 0.69 0.77729
Target:  5'- cCCACcGCGUagGGgGcgGGCAUCGCCg -3'
miRNA:   3'- uGGUGaUGUAg-CCgUuaCUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 60619 0.69 0.767244
Target:  5'- gGCCcguCUcgGUCGGgaaGAUGugACCGCCa -3'
miRNA:   3'- -UGGu--GAugUAGCCg--UUACugUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 5424 0.75 0.420136
Target:  5'- cGCCugUGCGcgcUUGGCAAUGACuguCCGUa -3'
miRNA:   3'- -UGGugAUGU---AGCCGUUACUGu--GGCGg -5'
18478 5' -52.6 NC_004681.1 + 16195 0.69 0.787186
Target:  5'- gGCgGCUgugcgcGCcgCGGUggUGACGCCaCCg -3'
miRNA:   3'- -UGgUGA------UGuaGCCGuuACUGUGGcGG- -5'
18478 5' -52.6 NC_004681.1 + 37073 0.73 0.541315
Target:  5'- uCCACUcguGCAagGGCGuuccgGUGACGgCCGCCg -3'
miRNA:   3'- uGGUGA---UGUagCCGU-----UACUGU-GGCGG- -5'
18478 5' -52.6 NC_004681.1 + 39375 0.7 0.736323
Target:  5'- gGCCGCgcACAUCGGgGAguacuUGACGCgGCg -3'
miRNA:   3'- -UGGUGa-UGUAGCCgUU-----ACUGUGgCGg -5'
18478 5' -52.6 NC_004681.1 + 42851 0.69 0.787186
Target:  5'- aACUGCUccgACAauUCGGCGAUGAUGUCGUCg -3'
miRNA:   3'- -UGGUGA---UGU--AGCCGUUACUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 30256 0.68 0.806488
Target:  5'- uCCACU-CcgCGGCc---GCGCCGCCu -3'
miRNA:   3'- uGGUGAuGuaGCCGuuacUGUGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 27957 0.73 0.562764
Target:  5'- cGCCACcguUcgCGGUAAUGACgacGCUGCCg -3'
miRNA:   3'- -UGGUGau-GuaGCCGUUACUG---UGGCGG- -5'
18478 5' -52.6 NC_004681.1 + 62089 0.71 0.643535
Target:  5'- gGCCGCgaucugGUCGaacaggugcaugcccGCGAUGACGCUGCCg -3'
miRNA:   3'- -UGGUGaug---UAGC---------------CGUUACUGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.