Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 21227 | 0.66 | 0.50726 |
Target: 5'- gUGGGGACCACCAcaaUGgGCGUCa- -3' miRNA: 3'- gACCUCUGGUGGUaggGCgCGCGGca -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 14456 | 0.66 | 0.50726 |
Target: 5'- -cGGAGGCgAacg-CCgCGCGCGCCGc -3' miRNA: 3'- gaCCUCUGgUgguaGG-GCGCGCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 36616 | 0.66 | 0.50726 |
Target: 5'- -cGG-GACCACCAaCUCGgCGaCGUCGUa -3' miRNA: 3'- gaCCuCUGGUGGUaGGGC-GC-GCGGCA- -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 2835 | 0.66 | 0.504323 |
Target: 5'- -cGGGGACCGCCgcuacacggucaccGUCCCcgagGCGCucgaCCGUg -3' miRNA: 3'- gaCCUCUGGUGG--------------UAGGG----CGCGc---GGCA- -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 19806 | 0.66 | 0.4975 |
Target: 5'- ----cGGCCGCCAguaCCGCGUGCUGc -3' miRNA: 3'- gaccuCUGGUGGUag-GGCGCGCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 50534 | 0.66 | 0.487824 |
Target: 5'- -cGGAGAUCGCgGUUgcugagCGCGCGCUGa -3' miRNA: 3'- gaCCUCUGGUGgUAGg-----GCGCGCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 39291 | 0.66 | 0.468747 |
Target: 5'- gUGcGcGGCCACCAUcgacaaauaCCUGCGCGCgCGg -3' miRNA: 3'- gAC-CuCUGGUGGUA---------GGGCGCGCG-GCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 8520 | 0.66 | 0.468747 |
Target: 5'- -gGuGAGACCGCC--CCCGCG-GCCa- -3' miRNA: 3'- gaC-CUCUGGUGGuaGGGCGCgCGGca -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 1679 | 0.66 | 0.467803 |
Target: 5'- -gGGAGGCCcagucagucccucACCAUCCUGUa-GCCGUc -3' miRNA: 3'- gaCCUCUGG-------------UGGUAGGGCGcgCGGCA- -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 62220 | 0.67 | 0.459352 |
Target: 5'- gCUGGu-ACCGCCA-CCUGUGCGCgCGc -3' miRNA: 3'- -GACCucUGGUGGUaGGGCGCGCG-GCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 56451 | 0.67 | 0.459352 |
Target: 5'- uUGGGGuCCACCcgCUUgaagGCGCGCUGc -3' miRNA: 3'- gACCUCuGGUGGuaGGG----CGCGCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 7584 | 0.67 | 0.459352 |
Target: 5'- -gGGAGGCCgugauggcACCuacgCCCGCGacuuCGCCGa -3' miRNA: 3'- gaCCUCUGG--------UGGua--GGGCGC----GCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 16239 | 0.67 | 0.450059 |
Target: 5'- -gGGAuGGCCGCCAgCgCCGCGaaGCCGa -3' miRNA: 3'- gaCCU-CUGGUGGUaG-GGCGCg-CGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 18320 | 0.67 | 0.449135 |
Target: 5'- -cGGAGuCUGCCcgCCCgguacacccggggGUGCGCCGg -3' miRNA: 3'- gaCCUCuGGUGGuaGGG-------------CGCGCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 53626 | 0.67 | 0.444533 |
Target: 5'- -cGGAGGCCaagaacgacggcGCCcuggucggugucgucAUCCacaaGCGCGCCGg -3' miRNA: 3'- gaCCUCUGG------------UGG---------------UAGGg---CGCGCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 39096 | 0.67 | 0.441784 |
Target: 5'- cCUGGuGGCCACCugcgcgggcaacaccUUCCGCGacCGCCGc -3' miRNA: 3'- -GACCuCUGGUGGu--------------AGGGCGC--GCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 14358 | 0.67 | 0.44087 |
Target: 5'- --cGAGGCCACCuccgCCCGCaugauCGCCGc -3' miRNA: 3'- gacCUCUGGUGGua--GGGCGc----GCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 509 | 0.67 | 0.44087 |
Target: 5'- gCUGGAcccGGCCAUC-UUCCGCG-GCCGc -3' miRNA: 3'- -GACCU---CUGGUGGuAGGGCGCgCGGCa -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 16146 | 0.67 | 0.422817 |
Target: 5'- -cGGcgcuGGCgGCCAUCCCGUcgcucaucGCGCUGUc -3' miRNA: 3'- gaCCu---CUGgUGGUAGGGCG--------CGCGGCA- -5' |
|||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 51192 | 0.67 | 0.422817 |
Target: 5'- -gGGAGGCCGUCGUCuuGgGCGCUc- -3' miRNA: 3'- gaCCUCUGGUGGUAGggCgCGCGGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home