miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18479 3' -61.3 NC_004681.1 + 509 0.67 0.44087
Target:  5'- gCUGGAcccGGCCAUC-UUCCGCG-GCCGc -3'
miRNA:   3'- -GACCU---CUGGUGGuAGGGCGCgCGGCa -5'
18479 3' -61.3 NC_004681.1 + 1543 0.67 0.422817
Target:  5'- -gGGGGACUugaugacCCcgCCCGCGgCGCCa- -3'
miRNA:   3'- gaCCUCUGGu------GGuaGGGCGC-GCGGca -5'
18479 3' -61.3 NC_004681.1 + 1679 0.66 0.467803
Target:  5'- -gGGAGGCCcagucagucccucACCAUCCUGUa-GCCGUc -3'
miRNA:   3'- gaCCUCUGG-------------UGGUAGGGCGcgCGGCA- -5'
18479 3' -61.3 NC_004681.1 + 2835 0.66 0.504323
Target:  5'- -cGGGGACCGCCgcuacacggucaccGUCCCcgagGCGCucgaCCGUg -3'
miRNA:   3'- gaCCUCUGGUGG--------------UAGGG----CGCGc---GGCA- -5'
18479 3' -61.3 NC_004681.1 + 2913 0.75 0.12746
Target:  5'- cCUGGGGGCCuggcugggcgacggcACCG-CCaCGCGCGCCGa -3'
miRNA:   3'- -GACCUCUGG---------------UGGUaGG-GCGCGCGGCa -5'
18479 3' -61.3 NC_004681.1 + 3275 0.74 0.163538
Target:  5'- aUGGaAGGCCACCcucaaggaGUCCCGCGC-CCGc -3'
miRNA:   3'- gACC-UCUGGUGG--------UAGGGCGCGcGGCa -5'
18479 3' -61.3 NC_004681.1 + 6559 0.71 0.2502
Target:  5'- -aGGAGucgUCACCGaagcaCCUGCGCGCCGUc -3'
miRNA:   3'- gaCCUCu--GGUGGUa----GGGCGCGCGGCA- -5'
18479 3' -61.3 NC_004681.1 + 7584 0.67 0.459352
Target:  5'- -gGGAGGCCgugauggcACCuacgCCCGCGacuuCGCCGa -3'
miRNA:   3'- gaCCUCUGG--------UGGua--GGGCGC----GCGGCa -5'
18479 3' -61.3 NC_004681.1 + 8520 0.66 0.468747
Target:  5'- -gGuGAGACCGCC--CCCGCG-GCCa- -3'
miRNA:   3'- gaC-CUCUGGUGGuaGGGCGCgCGGca -5'
18479 3' -61.3 NC_004681.1 + 14358 0.67 0.44087
Target:  5'- --cGAGGCCACCuccgCCCGCaugauCGCCGc -3'
miRNA:   3'- gacCUCUGGUGGua--GGGCGc----GCGGCa -5'
18479 3' -61.3 NC_004681.1 + 14456 0.66 0.50726
Target:  5'- -cGGAGGCgAacg-CCgCGCGCGCCGc -3'
miRNA:   3'- gaCCUCUGgUgguaGG-GCGCGCGGCa -5'
18479 3' -61.3 NC_004681.1 + 16146 0.67 0.422817
Target:  5'- -cGGcgcuGGCgGCCAUCCCGUcgcucaucGCGCUGUc -3'
miRNA:   3'- gaCCu---CUGgUGGUAGGGCG--------CGCGGCA- -5'
18479 3' -61.3 NC_004681.1 + 16239 0.67 0.450059
Target:  5'- -gGGAuGGCCGCCAgCgCCGCGaaGCCGa -3'
miRNA:   3'- gaCCU-CUGGUGGUaG-GGCGCg-CGGCa -5'
18479 3' -61.3 NC_004681.1 + 18320 0.67 0.449135
Target:  5'- -cGGAGuCUGCCcgCCCgguacacccggggGUGCGCCGg -3'
miRNA:   3'- gaCCUCuGGUGGuaGGG-------------CGCGCGGCa -5'
18479 3' -61.3 NC_004681.1 + 19806 0.66 0.4975
Target:  5'- ----cGGCCGCCAguaCCGCGUGCUGc -3'
miRNA:   3'- gaccuCUGGUGGUag-GGCGCGCGGCa -5'
18479 3' -61.3 NC_004681.1 + 21227 0.66 0.50726
Target:  5'- gUGGGGACCACCAcaaUGgGCGUCa- -3'
miRNA:   3'- gACCUCUGGUGGUaggGCgCGCGGca -5'
18479 3' -61.3 NC_004681.1 + 24753 0.7 0.275453
Target:  5'- -gGGAGAUCACCAcgaCCCGCaGCGCa-- -3'
miRNA:   3'- gaCCUCUGGUGGUa--GGGCG-CGCGgca -5'
18479 3' -61.3 NC_004681.1 + 24945 0.78 0.082401
Target:  5'- uUGGcGGCCGCCG-CCCGCGCcGCCGa -3'
miRNA:   3'- gACCuCUGGUGGUaGGGCGCG-CGGCa -5'
18479 3' -61.3 NC_004681.1 + 25171 0.67 0.422817
Target:  5'- -aGGAGGCUgagcgagguGCCG-CCCGCGcCGCCc- -3'
miRNA:   3'- gaCCUCUGG---------UGGUaGGGCGC-GCGGca -5'
18479 3' -61.3 NC_004681.1 + 33361 0.75 0.132915
Target:  5'- gCUGGcugAGACCgGCCgcGUCgCGCGCGCCGUg -3'
miRNA:   3'- -GACC---UCUGG-UGG--UAGgGCGCGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.