Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18479 | 3' | -61.3 | NC_004681.1 | + | 75409 | 0.69 | 0.347386 |
Target: 5'- --cGAGACCGa-AUUCCGCGCGgCCGUa -3' miRNA: 3'- gacCUCUGGUggUAGGGCGCGC-GGCA- -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 70523 | 0.69 | 0.347386 |
Target: 5'- -cGGAGACgaugacaGCUGUCgCGCGCGCgCGUg -3' miRNA: 3'- gaCCUCUGg------UGGUAGgGCGCGCG-GCA- -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 68627 | 0.7 | 0.295702 |
Target: 5'- -gGGAGaACCACCGgcauggcgCCCagGCGUGCCGc -3' miRNA: 3'- gaCCUC-UGGUGGUa-------GGG--CGCGCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 66937 | 0.7 | 0.302704 |
Target: 5'- gUGGcGGCCcUgGUgCCGCGCGCCGa -3' miRNA: 3'- gACCuCUGGuGgUAgGGCGCGCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 62220 | 0.67 | 0.459352 |
Target: 5'- gCUGGu-ACCGCCA-CCUGUGCGCgCGc -3' miRNA: 3'- -GACCucUGGUGGUaGGGCGCGCG-GCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 62175 | 0.77 | 0.099398 |
Target: 5'- aUGGAGGCCGCCAUgCCGCGCacaGUCa- -3' miRNA: 3'- gACCUCUGGUGGUAgGGCGCG---CGGca -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 61738 | 0.77 | 0.091742 |
Target: 5'- -aGGAGGCCGCC--CUCGCGCGCCa- -3' miRNA: 3'- gaCCUCUGGUGGuaGGGCGCGCGGca -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 57788 | 0.72 | 0.215937 |
Target: 5'- -cGGAGACCgcgACCAcgCgCCGCGCcGCCGa -3' miRNA: 3'- gaCCUCUGG---UGGUa-G-GGCGCG-CGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 56451 | 0.67 | 0.459352 |
Target: 5'- uUGGGGuCCACCcgCUUgaagGCGCGCUGc -3' miRNA: 3'- gACCUCuGGUGGuaGGG----CGCGCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 53626 | 0.67 | 0.444533 |
Target: 5'- -cGGAGGCCaagaacgacggcGCCcuggucggugucgucAUCCacaaGCGCGCCGg -3' miRNA: 3'- gaCCUCUGG------------UGG---------------UAGGg---CGCGCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 52857 | 0.68 | 0.363292 |
Target: 5'- -cGGAaggcuGGCCAUCGgccugCCCGCGUGCCc- -3' miRNA: 3'- gaCCU-----CUGGUGGUa----GGGCGCGCGGca -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 52656 | 0.72 | 0.205442 |
Target: 5'- -aGGGGACCACuCGUCCgCGauaGCGUCGa -3' miRNA: 3'- gaCCUCUGGUG-GUAGG-GCg--CGCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 51192 | 0.67 | 0.422817 |
Target: 5'- -gGGAGGCCGUCGUCuuGgGCGCUc- -3' miRNA: 3'- gaCCUCUGGUGGUAGggCgCGCGGca -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 50534 | 0.66 | 0.487824 |
Target: 5'- -cGGAGAUCGCgGUUgcugagCGCGCGCUGa -3' miRNA: 3'- gaCCUCUGGUGgUAGg-----GCGCGCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 49996 | 1.06 | 0.000665 |
Target: 5'- cCUGGAGACCACCAUCCCGCGCGCCGUc -3' miRNA: 3'- -GACCUCUGGUGGUAGGGCGCGCGGCA- -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 49400 | 0.7 | 0.268954 |
Target: 5'- gUGcAGACCGCCcgCCuUGCGCGCCu- -3' miRNA: 3'- gACcUCUGGUGGuaGG-GCGCGCGGca -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 46780 | 0.71 | 0.2502 |
Target: 5'- -cGGcG-UCACgguCAUCCCGCGCGCCGUc -3' miRNA: 3'- gaCCuCuGGUG---GUAGGGCGCGCGGCA- -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 39291 | 0.66 | 0.468747 |
Target: 5'- gUGcGcGGCCACCAUcgacaaauaCCUGCGCGCgCGg -3' miRNA: 3'- gAC-CuCUGGUGGUA---------GGGCGCGCG-GCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 39096 | 0.67 | 0.441784 |
Target: 5'- cCUGGuGGCCACCugcgcgggcaacaccUUCCGCGacCGCCGc -3' miRNA: 3'- -GACCuCUGGUGGu--------------AGGGCGC--GCGGCa -5' |
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18479 | 3' | -61.3 | NC_004681.1 | + | 38213 | 0.68 | 0.396589 |
Target: 5'- aUGGGGcgGCCGaagaCGUCCCGCggcgGCGCCa- -3' miRNA: 3'- gACCUC--UGGUg---GUAGGGCG----CGCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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