miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18479 5' -55.4 NC_004681.1 + 41663 0.66 0.801911
Target:  5'- cCUGCGGGGuGGCGCUgcauggCGGCcGCGa-- -3'
miRNA:   3'- -GAUGUUCC-UCGCGGa-----GCCGaUGCaga -5'
18479 5' -55.4 NC_004681.1 + 56866 0.66 0.801911
Target:  5'- gUACAGGuGGGCcucGCCccgCGGC-ACGUCg -3'
miRNA:   3'- gAUGUUC-CUCG---CGGa--GCCGaUGCAGa -5'
18479 5' -55.4 NC_004681.1 + 39250 0.66 0.801911
Target:  5'- -gGCAAGG-GCGCCaagGGCcgccGCGUCa -3'
miRNA:   3'- gaUGUUCCuCGCGGag-CCGa---UGCAGa -5'
18479 5' -55.4 NC_004681.1 + 41990 0.66 0.762975
Target:  5'- cCUACGcGGGGGCGaUCUCGGCcagccuUGUCg -3'
miRNA:   3'- -GAUGU-UCCUCGC-GGAGCCGau----GCAGa -5'
18479 5' -55.4 NC_004681.1 + 54373 0.66 0.75289
Target:  5'- -gGCGAGGAccaGCGCCucuUCGGCgguCGUg- -3'
miRNA:   3'- gaUGUUCCU---CGCGG---AGCCGau-GCAga -5'
18479 5' -55.4 NC_004681.1 + 3643 0.67 0.742687
Target:  5'- cCUGCGAGGAGU---UCGGUguugUGCGUCg -3'
miRNA:   3'- -GAUGUUCCUCGcggAGCCG----AUGCAGa -5'
18479 5' -55.4 NC_004681.1 + 63686 0.67 0.732377
Target:  5'- cCUGCAAGuGGuGCGCCgCGGaCU-CGUCa -3'
miRNA:   3'- -GAUGUUC-CU-CGCGGaGCC-GAuGCAGa -5'
18479 5' -55.4 NC_004681.1 + 29030 0.67 0.72197
Target:  5'- gUAgGGGGAGCGCCUCaGUcgGCGa-- -3'
miRNA:   3'- gAUgUUCCUCGCGGAGcCGa-UGCaga -5'
18479 5' -55.4 NC_004681.1 + 66904 0.67 0.700908
Target:  5'- -cACAccGAGCGCCUUGGCgUAC-UCg -3'
miRNA:   3'- gaUGUucCUCGCGGAGCCG-AUGcAGa -5'
18479 5' -55.4 NC_004681.1 + 17939 0.68 0.690275
Target:  5'- -cGCAGGuGAGUGCCgagggCGGCUcCGUg- -3'
miRNA:   3'- gaUGUUC-CUCGCGGa----GCCGAuGCAga -5'
18479 5' -55.4 NC_004681.1 + 64935 0.68 0.690275
Target:  5'- -cACGAGGuggcgacGCGCCUgGaGCUggACGUCUa -3'
miRNA:   3'- gaUGUUCCu------CGCGGAgC-CGA--UGCAGA- -5'
18479 5' -55.4 NC_004681.1 + 54689 0.68 0.679588
Target:  5'- -gACAAGGAGauCGCCU-GGCUG-GUCUc -3'
miRNA:   3'- gaUGUUCCUC--GCGGAgCCGAUgCAGA- -5'
18479 5' -55.4 NC_004681.1 + 60800 0.79 0.15948
Target:  5'- --cCAAGGAGCGCCcCaGCUACGUCa -3'
miRNA:   3'- gauGUUCCUCGCGGaGcCGAUGCAGa -5'
18479 5' -55.4 NC_004681.1 + 50031 1.07 0.001885
Target:  5'- gCUACAAGGAGCGCCUCGGCUACGUCUc -3'
miRNA:   3'- -GAUGUUCCUCGCGGAGCCGAUGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.